Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30409g00019 ATGGATCGTGAGAATCATGGATCTACATCAGAAAATGCAGATTCAATTCCTATTGCTCCATTAAAAATTTCACCAACAATGTCACCAAGATCACCTTCTAGGTCACCAAGATCACCAAGGTCTCCAAGGTCTCCCAAGTCACCAATAAGGTCTCCTAATTCTCCAAGGTCACCAAAGGTGCAAGTCAAGTCCAGCCTAAGTCCAAAGAATAATAGGAATTCACATTCTCCAAGAGATGGACGTCCAAAAAAAGGTGGTGCTGGAGGGAAAGGTACTTGGGGTGGATTGCTTGATACAGATGACAATGGCACTCTTGATCCCCATGACCCAAACTATGACAGCACAGAGGAATATGACCATTCAAATGAAAAGAAAAAGTCAACCCCACCACCAGAATTGGTGGAATACAAGAAGAAAGCAACAGTAATTGTGGAAGAATACTTTGCAACTGATGATGTTGTTGCAACAATTGATGAACTCAGAGAACTTGGAAAGCCACGGTATGGCTACTATTTTGTTAAGAAGCTTGTGTCTATGTCAATGGACAGACATGACAAGGAAAAAGAAATGGCTGCTATTCTGCTATCTGCACTCTATGCTGACACATTTCACCCTTCACAAGTTTACAAAGGCTTCAGCAAATTAGTCGAATCGGCCGATGATTTGATCGTGGATATACCGGACACAGTAGATGTTCTAGCACTTTTTTTAGCCAGAGCAGTTGTTGATGACATTCTCCCCCCTGCATTCTTGAAGAAACATATGGACTACTTGCCGAAAGACTCGAAAGGCATCGAGGTCCTGAAGAAAGCAGAGAAGAGCTACCTTGCAGCGCCTCTCCACGCCGAAATCATTGAGAGAAGATGGGGAGGTAGCAAGAACATGACAGTTGATGATGTCAAGTCAAGGATAAACAATTTCTTGAAGGAGTATGTAGTGAGTGGTGACAAGAAAGAAGCTTTCAGATGCATCAAAGATTTGAAGGTTCCATTCTTCCATCATGAAATTGTGAAGAGGGCTCTTATAATGGCTATGGAGAGGCGCCAAGCTGAAGCGCCTCTACTAGACCTTCTAAAAGAGGCTGCTGAAGATGGTTTCATAAACTCTA 1108 0.4269 MDRENHGSTSENADSIPIAPLKISPTMSPRSPSRSPRSPRSPRSPKSPIRSPNSPRSPKVQVKSSLSPKNNRNSHSPRDGRPKKGGAGGKGTWGGLLDTDDNGTLDPHDPNYDSTEEYDHSNEKKKSTPPPELVEYKKKATVIVEEYFATDDVVATIDELRELGKPRYGYYFVKKLVSMSMDRHDKEKEMAAILLSALYADTFHPSQVYKGFSKLVESADDLIVDIPDTVDVLALFLARAVVDDILPPAFLKKHMDYLPKDSKGIEVLKKAEKSYLAAPLHAEIIERRWGGSKNMTVDDVKSRINNFLKEYVVSGDKKEAFRCIKDLKVPFFHHEIVKRALIMAMERRQAEAPLLDLLKEAAEDGFINS 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30409g00019 369 Gene3D - 286 369 - -
Stsc30409g00019 369 FunFam programmed cell death protein 4 125 278 - -
Stsc30409g00019 369 Gene3D - 123 275 - -
Stsc30409g00019 369 MobiDBLite consensus disorder prediction 35 52 - -
Stsc30409g00019 369 SMART ma3_7 136 247 IPR003891 -
Stsc30409g00019 369 SMART ma3_7 300 368 IPR003891 -
Stsc30409g00019 369 MobiDBLite consensus disorder prediction 1 132 - -
Stsc30409g00019 369 MobiDBLite consensus disorder prediction 53 73 - -
Stsc30409g00019 369 PANTHER PROGRAMMED CELL DEATH 4 43 369 IPR039778 GO:0045892
Stsc30409g00019 369 SUPERFAMILY ARM repeat 295 368 IPR016024 -
Stsc30409g00019 369 SUPERFAMILY ARM repeat 129 294 IPR016024 -
Stsc30409g00019 369 ProSiteProfiles MI domain profile. 135 256 IPR003891 -
Stsc30409g00019 369 MobiDBLite consensus disorder prediction 102 132 - -
Stsc30409g00019 369 ProSiteProfiles MI domain profile. 299 369 IPR003891 -
Stsc30409g00019 369 Pfam MA3 domain 301 364 IPR003891 -
Stsc30409g00019 369 Pfam MA3 domain 137 247 IPR003891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30409g00019 Stsc-Chr30409 74278 75772 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30409g00019 144 246 Eukaryotic Initiation Factors Gene Family AT3G60240 22.642 3.40e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30409g00019 - - gmx:102668745 509.605