Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30409g00001 ATGTTCCACACAAAACACTGTCTCTTCTTGTTACTCACCACGGTTGTTGTTCTCCTTTCTTCCACCACCAACGCCGCCGCCATAACACCAGGCTCCACCCTCTCAGCTTCCACCAACCAAACATGGAGTTCACCCACCAACACCTTCTTCCTAGGCTTCATCCCTGTCAACCCACCCACCACCCCTCCCACCTTCACCGCCTCCATCTTCTACTCCGGCAACTCCCCCGTCGTCTGGTCCGCCGCCAACGGCACCCCCGTTGACTCCGGAGCCTCCCTAAGCTTCCTATCCTCGGGAGCCCTTCGTCTTGTTAACGGCTCCGGCGCCACCGTCTGGGACTCCGGCACGGCCAACCTTGGTGGCTCCTCCGCCACACTCGAAGACAGTGGCAATTTGGTAATTTCAAACGGAAGCCATACCCCTCTGTGGCAATCGTTCGACCACCCCACCGATACACTCGTTCCCTCTCAGAATTTCAGCTCCGGTAAGGTTCTGAGATCTGGTTCTTACTCTTTTACCCTTAGGAATAATGGGAATTTAACCCTAAATTGGAACGGTAGCAATAGCATACTGTATTGGAACCAGGGTTTGAATTCTTCTGTGAATGCTGTGAGCAACCCTGTTTTGGCTTTGACTTCCATTGGAATTTTGCAACTTTCTGGTGCAAATTTGACAAGTGCAGCTATTGTTGCTTATAGTAGTGACTATGCTGAGGGTGGTAGTGATGTTTTGAGGGTTTTGAAAATGGATAATGATGGAAATTTGAGGATTTATTCCACTTCCAAGGGTAGTGGAAACCCTACTGCTAGGTGGGCTGCAGTTCAGGATCAGTGTGAGGTTTATGCTTATTGTGGCAACTATGGTATTTGTAGCTATAATGATTCGAATCCGGTTTGTGGTTGCCCTTCTCAGAATTTTGAGATGGTTGATCCCAATGATAGTAGGAAAGGGTGTAAGAGGAAGGTGAGTCTTAACAATTGCCAAGGGAATGCAACTATGTTGAACTTGGATAATACTCAGTTGTTCACTTATCCCCCCGAGGTTCAGTCGCAGGTGTTCTACATCGGTATATCGGCTTGTAAGGGTAATTGTCTTTCCAACACTGGTGGTTGTTTTGCTTCTACTGCCTTGGGGGATGGCACCGGGCAATGTTACTTGAAGTCGGAGGATTTGGTCTCTGGATATTCGAGTCCAGCACTGCCTAGTACTTCTTATATCAAGGTTTGTCCACCGGTGGATCCGAATCCGCCACCATCTTCAGGGGTGACTGTGAAGCAGAAGAGCTCGAGAGTACCAGCTTGGGTTGTGGTGGTTGTCATTTTGGCCACTCTTCTAGCCTTGGTTGCATTTGAAGGTGGTTTGTGGATGTGGTGTTGTAGGAACAACAAAAGGTTTGGTGCATTGTCTGCGCAGTATGCACTTCTTGAGTATGCTTCGGGTGCACCGGTCCAATTCTCCTACAGGGAGCTTGAGCGCGCGACAAAGGGGTTCAAGGAGAAGCTTGGAGCTGGAGGATTCGGTGCTGTCTATAGAGGAACTCTTGTTAACAAGACTGTTGCTGCGGTGAAGCAACTCGAGGGCATCGAGCAAGGTGAGAAACAGTTTAGGATGGAAGTTGCTACCATTAGTAGCACTCATCATCTGAATTTGGTGAGGCTAATTGGCTTTTGCTCGGAAGGGCGCCACAGGCTTTTAGTTTATGAGTTCATGAAAAACGGTTCTCTAGATAATTTTCTATTCATGTCAGAGGGACATTCAGGAAAATTGTTGAATTGGGAATACCGGTACAGCATCGCTCTTGGCACTGCGAGGGGCATCACATACCTTCACGAGGAGTGTCGCGACTGCATAGTCCATTGCGATATAAAGCCTGAAAACATTCTCTTGGATGAGAATTATATTTCTAAGGTCTCTGATTTTGGTCTTGCAAAGCTCATAAACCCGAAGGACCATAGGCATAGGACCTTGACTAGTGTGAGAGGAACCAGAGGATATTTAGCACCTGAGTGGCTTGCAAATCTTCCAATTACATCTAAATCCGATGTTTACAGCTTCGGCATGGTTTTGTTGGAGATTGTGAGCGGAAGGAGGAATTTCGAGGTCTCGGAGGAAACAAATAGGAAGAAGTTCTCCATTTGGGCCTATGAAGAGTTTGAGAAAGGCAACATCAATGGAATTTTGGACAAAAGGCTAGTAGACCAAGAAGTTGATATGGCGCAAGTGACGAGAGCAATTCAGGCAAGCTTTTGGTGCATCCAGGAGCAGCCCTCGCATAGACCGACAATGAGCAGAGTGGTGCAAATGCTCGAAGGCGTTGCTGAGATTGAGAGGCCG 2334 0.4799 MFHTKHCLFLLLTTVVVLLSSTTNAAAITPGSTLSASTNQTWSSPTNTFFLGFIPVNPPTTPPTFTASIFYSGNSPVVWSAANGTPVDSGASLSFLSSGALRLVNGSGATVWDSGTANLGGSSATLEDSGNLVISNGSHTPLWQSFDHPTDTLVPSQNFSSGKVLRSGSYSFTLRNNGNLTLNWNGSNSILYWNQGLNSSVNAVSNPVLALTSIGILQLSGANLTSAAIVAYSSDYAEGGSDVLRVLKMDNDGNLRIYSTSKGSGNPTARWAAVQDQCEVYAYCGNYGICSYNDSNPVCGCPSQNFEMVDPNDSRKGCKRKVSLNNCQGNATMLNLDNTQLFTYPPEVQSQVFYIGISACKGNCLSNTGGCFASTALGDGTGQCYLKSEDLVSGYSSPALPSTSYIKVCPPVDPNPPPSSGVTVKQKSSRVPAWVVVVVILATLLALVAFEGGLWMWCCRNNKRFGALSAQYALLEYASGAPVQFSYRELERATKGFKEKLGAGGFGAVYRGTLVNKTVAAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRLIGFCSEGRHRLLVYEFMKNGSLDNFLFMSEGHSGKLLNWEYRYSIALGTARGITYLHEECRDCIVHCDIKPENILLDENYISKVSDFGLAKLINPKDHRHRTLTSVRGTRGYLAPEWLANLPITSKSDVYSFGMVLLEIVSGRRNFEVSEETNRKKFSIWAYEEFEKGNINGILDKRLVDQEVDMAQVTRAIQASFWCIQEQPSHRPTMSRVVQMLEGVAEIERP 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30409g00001 778 PANTHER OS07G0415500 PROTEIN 10 778 - -
Stsc30409g00001 778 Pfam S-locus glycoprotein domain 236 302 IPR000858 GO:0048544
Stsc30409g00001 778 Gene3D - 21 148 IPR036426 -
Stsc30409g00001 778 ProSiteProfiles PAN/Apple domain profile. 327 409 IPR003609 -
Stsc30409g00001 778 SMART serkin_6 495 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30409g00001 778 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 148 - -
Stsc30409g00001 778 ProSiteProfiles Protein kinase domain profile. 495 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30409g00001 778 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Stsc30409g00001 778 ProSitePatterns Protein kinases ATP-binding region signature. 501 523 IPR017441 GO:0005524
Stsc30409g00001 778 SUPERFAMILY Protein kinase-like (PK-like) 477 770 IPR011009 -
Stsc30409g00001 778 Pfam D-mannose binding lectin 77 161 IPR001480 -
Stsc30409g00001 778 Gene3D Transferase(Phosphotransferase) domain 1 570 777 - -
Stsc30409g00001 778 ProSiteProfiles Bulb-type lectin domain profile. 150 270 IPR001480 -
Stsc30409g00001 778 Gene3D Phosphorylase Kinase; domain 1 463 569 - -
Stsc30409g00001 778 CDD STKc_IRAK 501 771 - -
Stsc30409g00001 778 SMART blect_4 33 149 IPR001480 -
Stsc30409g00001 778 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 570 778 - -
Stsc30409g00001 778 PIRSF SRK 1 778 IPR024171 GO:0004674
Stsc30409g00001 778 FunFam S-receptor-like serine/threonine-protein kinase 467 569 - -
Stsc30409g00001 778 CDD B_lectin 37 149 IPR001480 -
Stsc30409g00001 778 Pfam Protein kinase domain 498 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30409g00001 778 Gene3D - 149 275 IPR036426 -
Stsc30409g00001 778 ProSiteProfiles Bulb-type lectin domain profile. 25 147 IPR001480 -
Stsc30409g00001 778 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 149 273 - -
Stsc30409g00001 778 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 197 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30409g00001 Stsc-Chr30409 1 2385 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30409g00001 468 778 Receptor kinase-like Gene Family AT5G20050 43.827 5.74e-79 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc30409g00001 Pkinase 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30409g00001 - - gmx:100795819 1206.43