Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30408g00005 ATGCATGGGAATAAGAGAAAGAAAGAGAAAGGCGATGAATTAGTGGATTACATAAGGAAAGGGCCATGGAAGAAAGAGGAAGATGAAGCGCTACTCAGCCATGTCAGCAAGTATGGCCCTCGTGACTGGAGCTCCATTCGATCCAAGGGTCTTCTTCAACGAACCGGCAAGTCCTGTCGTCTTCGTTGGGTCAACAAGCTTCGACCAAACCTCAAGAACGGGTGCAAGTTCACAGCAGAGGAAGAGAGGGTTGTGATAGAATTGCAGGCACAATTTGGGAACAAATGGGCTAAGATTGCTTCCTATTTGAGTGGAAGAACAGACAATGATGTCAAGAATTTCTGGAGCAGTAGGCAGAAGAGGCTTGCCAGGATTCTGCAGGCATCATCAACACCCAACTCTAAGTCACACAGGAACAAACCTAAACCTCTTCATCTTCCCAATTTCCAGGTTCCTAAGCTGAGTTCTTCATCAGAGGGAGAATCATCTTCAAAGCCTCAGTCATGCTCATTCTCCTGCAATGACAATTCAGAGGTCATAAAAATGGTGGCATTACCAGATCTTATCAAGCCCAAGTTACCTAATTCTGAGCAAGAAGAATTTGCACCTTTGGAGATCAACAAAAGCAGTAGTAATGTGGAACAAACTCCCTTCCCTCAGATTCCTGATGAACTCCAAACTGATCTAACACCATTCTCATTGGGAGACCAAGATCTCTTGACTAGAATTGATGATCCAAATTTTGCTGATTACTTTGGACCTCTTGGTGCATATGAGCTTGGGCTAGCCCCACAACACACCATTGGGTTCCCTTTCTTTGATCCATCAGAAGCAAGTTGCAGAATGGGGTCAAGGGACATAATAGGTATCTCCAAAAACTATGACAGCGTCTTTGATGATTTCCCAGTTGACATGTTTGATCAGATGGATCCACCTTCAATTCCTTCCAAGCTCTGA 957 0.4441 MHGNKRKKEKGDELVDYIRKGPWKKEEDEALLSHVSKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFTAEEERVVIELQAQFGNKWAKIASYLSGRTDNDVKNFWSSRQKRLARILQASSTPNSKSHRNKPKPLHLPNFQVPKLSSSSEGESSSKPQSCSFSCNDNSEVIKMVALPDLIKPKLPNSEQEEFAPLEINKSSSNVEQTPFPQIPDELQTDLTPFSLGDQDLLTRIDDPNFADYFGPLGAYELGLAPQHTIGFPFFDPSEASCRMGSRDIIGISKNYDSVFDDFPVDMFDQMDPPSIPSKL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30408g00005 318 FunFam MYB transcription factor 20 72 - -
Stsc30408g00005 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 71 IPR017930 -
Stsc30408g00005 318 Pfam Myb-like DNA-binding domain 23 73 - -
Stsc30408g00005 318 SMART sant 19 69 IPR001005 -
Stsc30408g00005 318 SMART sant 73 121 IPR001005 -
Stsc30408g00005 318 MobiDBLite consensus disorder prediction 150 171 - -
Stsc30408g00005 318 FunFam Transcription factor GAMYB 75 145 - -
Stsc30408g00005 318 ProSiteProfiles Myb-like domain profile. 76 119 IPR001005 -
Stsc30408g00005 318 Pfam Myb-like DNA-binding domain 76 115 IPR001005 -
Stsc30408g00005 318 Gene3D - 20 72 - -
Stsc30408g00005 318 SUPERFAMILY Homeodomain-like 18 115 IPR009057 -
Stsc30408g00005 318 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Stsc30408g00005 318 Gene3D - 75 145 - -
Stsc30408g00005 318 CDD SANT 22 67 IPR001005 -
Stsc30408g00005 318 CDD SANT 76 115 IPR001005 -
Stsc30408g00005 318 PANTHER TRANSCRIPTION FACTOR DUO1 12 316 - -
Stsc30408g00005 318 MobiDBLite consensus disorder prediction 126 171 - -
Stsc30408g00005 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 123 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30408g00005 Stsc-Chr30408 16753 18105 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30408g00005 18 316 MYB Transcription Factor Family AT3G60460 50.809 2.38e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc30408g00005 Myb_DNA-bind_6 3.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30408g00005 K09422 - gmx:100818656 399.823