Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30406g00009 ATGGAGACGTTGGAACTGAAGGAAATTCAGAGACTCGAAGGCCACACCGATAGGGTTTGGAGCTTGGCTTGGAACCCCGCCACCGGCCACAACGGTGTCCCCCTACTCTTCGCCTCTTGCAGCGGCGACAAAACTGTTCGAATCTGGGAACAGAACCTCTCGTCTGGTCTTTGGTCCACCAAGGCGGTTTTGGATGAGCCGCACACTCGAACGGTTCGGTCGTGCGCTTGGTCGCCTTCCGGTAAATTGCTGGCCACTGCAAGTTTTGATGCCACTACAGCTATATGGGAAAATGTTGGGGGTGATTATGAGTGTGTGTCCACTTTGGAGGGTCATGAACATGAAGTGAAGAGTGTGTCCTGGAATGCATCGGGGAACCTACTTGCAACGTGTAGTAGAGATAAATCTGTTTGGATATGGGAAGTGCTGCCAGGGAATGAATTTGAGTGTGTGTCAGTGTTGCAAGGACATACCCAAGATGTGAAAATGGTGAAATGGCATCCAACAATGGATATCTTATTTTCATGTAGTTATGATAACACTATTAAGGTTTGGGCAGATGAAGGTGATAGTGATGATTGGCAATGTGTTCAAACAATAGGAGAACCGAATAATGGTCATACTTCAACTGTTTGGGCGCTCTCTTTCAATGCCAATGGTGATAAAATGGTTACTTGCAGTGATGATCTTACACTTAAGATATGGGAATCAGAAAATATAGGGATGCAATCTGGTGGTGGATTCAGACCTTGGAGACATCTTTGCACTCTTTCAGGGTATCATGATCGGACAATTTTCTCTGTTCATTGGTCAAGAGAAGGTATCTTTGCTAGTGGAGCTGCCGATGATGCAATACGTCTTTTTGTGGATGACAATGAAAGTCAAGTGGGTGGTCCTCTATACAAGCTGCTGCTGAAGAAGGAAAAGGCCCATGATATGGACATAAATTCAGTGCAGTGGAGCCCTGGGGAGAAGCCGCTATTAGCCTCTGCAAGTGATGATGGGACAATCAAGGTGTGGGAGCTAGTGTCACAGAGGTGA 1041 0.4659 METLELKEIQRLEGHTDRVWSLAWNPATGHNGVPLLFASCSGDKTVRIWEQNLSSGLWSTKAVLDEPHTRTVRSCAWSPSGKLLATASFDATTAIWENVGGDYECVSTLEGHEHEVKSVSWNASGNLLATCSRDKSVWIWEVLPGNEFECVSVLQGHTQDVKMVKWHPTMDILFSCSYDNTIKVWADEGDSDDWQCVQTIGEPNNGHTSTVWALSFNANGDKMVTCSDDLTLKIWESENIGMQSGGGFRPWRHLCTLSGYHDRTIFSVHWSREGIFASGAADDAIRLFVDDNESQVGGPLYKLLLKKEKAHDMDINSVQWSPGEKPLLASASDDGTIKVWELVSQR 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30406g00009 346 ProSitePatterns Trp-Asp (WD) repeats signature. 128 142 IPR019775 -
Stsc30406g00009 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 308 346 IPR001680 GO:0005515
Stsc30406g00009 346 Pfam WD domain, G-beta repeat 149 185 IPR001680 GO:0005515
Stsc30406g00009 346 Pfam WD domain, G-beta repeat 8 49 IPR001680 GO:0005515
Stsc30406g00009 346 Pfam WD domain, G-beta repeat 104 140 IPR001680 GO:0005515
Stsc30406g00009 346 Pfam WD domain, G-beta repeat 309 340 IPR001680 GO:0005515
Stsc30406g00009 346 Pfam WD domain, G-beta repeat 194 235 IPR001680 GO:0005515
Stsc30406g00009 346 Pfam WD domain, G-beta repeat 68 96 IPR001680 GO:0005515
Stsc30406g00009 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 204 236 - -
Stsc30406g00009 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 154 185 IPR001680 GO:0005515
Stsc30406g00009 346 CDD WD40 8 341 - -
Stsc30406g00009 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 109 142 IPR001680 GO:0005515
Stsc30406g00009 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 65 97 - -
Stsc30406g00009 346 PANTHER WD40 PROTEIN CIAO1 6 345 IPR028608 GO:0016226|GO:0097361
Stsc30406g00009 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 12 50 IPR001680 GO:0005515
Stsc30406g00009 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 204 236 IPR001680 GO:0005515
Stsc30406g00009 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 65 97 IPR001680 GO:0005515
Stsc30406g00009 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 12 50 - -
Stsc30406g00009 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 308 346 - -
Stsc30406g00009 346 SMART WD40_4 5 50 IPR001680 GO:0005515
Stsc30406g00009 346 SMART WD40_4 57 97 IPR001680 GO:0005515
Stsc30406g00009 346 SMART WD40_4 102 141 IPR001680 GO:0005515
Stsc30406g00009 346 SMART WD40_4 147 186 IPR001680 GO:0005515
Stsc30406g00009 346 SMART WD40_4 193 236 IPR001680 GO:0005515
Stsc30406g00009 346 SMART WD40_4 301 341 IPR001680 GO:0005515
Stsc30406g00009 346 SMART WD40_4 250 289 IPR001680 GO:0005515
Stsc30406g00009 346 Gene3D - 34 346 IPR015943 GO:0005515
Stsc30406g00009 346 PRINTS G protein beta WD-40 repeat signature 128 142 IPR020472 -
Stsc30406g00009 346 PRINTS G protein beta WD-40 repeat signature 328 342 IPR020472 -
Stsc30406g00009 346 PRINTS G protein beta WD-40 repeat signature 37 51 IPR020472 -
Stsc30406g00009 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 109 142 - -
Stsc30406g00009 346 ProSitePatterns Trp-Asp (WD) repeats signature. 328 342 IPR019775 -
Stsc30406g00009 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 154 185 - -
Stsc30406g00009 346 SUPERFAMILY WD40 repeat-like 4 340 IPR036322 GO:0005515
Stsc30406g00009 346 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 4 344 IPR028608 GO:0016226|GO:0097361
Stsc30406g00009 346 FunFam Probable cytosolic iron-sulfur protein assembly protein CIAO1 4 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30406g00009 Stsc-Chr30406 64498 69449 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30406g00009 80 346 U-box Gene Family AT2G33340 26.966 1.78e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30406g00009 K24730 - aip:107645668 674.085