Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30405g00009 ATGGAGGAGTTAAATGCATCAGCAACCAAATGGTTATCTGATCTGGAGATGGATGAGTACGATTTGTTTTCAGAGTGCCATTTAAAGAACTTGCTGGATGATGATGAAGACAATCAGTTTCTTTCTCATGAGCTGTTGATGAGTGCAGTGCAGGAGGAGGGAGAGGGGGATTTTGAATTGCACCAACAACCAGTTTTCTCTCGCAATTATGAGCAAACATGTTTTGAAGAGAGGCCAAGCAAGCAACTCAGAACCACCAACACTACTACTAGTATTACCTCATCATCATCAAGCATCACTGCCCACCCTCAAAACTTGCCATCTAATTCTTCATCTTCTTCTTCTCCCATCACCTCCCAGATTCTCTCTTTTGAAAACTCCTACAACTCCTCCTCCCCCTCCCCTCCTCTCATTTCCACCCACCTTTATGGCTTTGAATTTGATGTTGTTACTACTAATAATAATAAGGTTTCACTGCAACAACCACAAGCTGGTAATAATACCAAGAAGATGGAACAAACAAGGAAACCCCAAAGTCAAGGGAGTAACAGTAAGAGACAGGGAGCTCAGACTCAGGATCACATCATGGCTGAGAGAAAGCGAAGGGAGAAGCTCAGCCAAAGCTTGATCGCCCTTGCAGCTCTTATTCCAGGCTTAAAAAAGATGGATAAGGCGTCAGTGCTGGGAGATGCAATCAAGTACGTGAAAGAGCTTAAGGAGCGATTGAAGGTTCTAGAAGAAGAAGAAGAACAGAACAAAGTGGATTCTGTTTTGATTGTGAAGAAGCCACATCTCATGAGCAGCAGCAGCGACGATGATTCGTCTTCCTGTGATAATGAGAGCAGCTTGGAAGCAGCAGCGGCACACGTGGAAGCAAGAGTAGCGGCGAAGGAGAAGGAGGTGCTGCTCCGGATCCACTGCAAGAAACAGAAGGGCATTTACGTGAAATTACTCTCCGAGATACAAAGGCTTCACCTCTTTGTTGTCCACAGCAGTGTCCTACCATTCGGGGATTCAGTTCTTGACATAACCATCGTGGCTCAGGTATGGAGATCAGATAACATTATTAAGAATTAA 1077 0.4457 MEELNASATKWLSDLEMDEYDLFSECHLKNLLDDDEDNQFLSHELLMSAVQEEGEGDFELHQQPVFSRNYEQTCFEERPSKQLRTTNTTTSITSSSSSITAHPQNLPSNSSSSSSPITSQILSFENSYNSSSPSPPLISTHLYGFEFDVVTTNNNKVSLQQPQAGNNTKKMEQTRKPQSQGSNSKRQGAQTQDHIMAERKRREKLSQSLIALAALIPGLKKMDKASVLGDAIKYVKELKERLKVLEEEEEQNKVDSVLIVKKPHLMSSSSDDDSSSCDNESSLEAAAAHVEARVAAKEKEVLLRIHCKKQKGIYVKLLSEIQRLHLFVVHSSVLPFGDSVLDITIVAQVWRSDNIIKN 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30405g00009 358 PANTHER BHLH TRANSCRIPTION FACTOR 71 349 - -
Stsc30405g00009 358 Pfam Helix-loop-helix DNA-binding domain 192 238 IPR011598 GO:0046983
Stsc30405g00009 358 MobiDBLite consensus disorder prediction 159 202 - -
Stsc30405g00009 358 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 191 256 IPR036638 GO:0046983
Stsc30405g00009 358 SMART finulus 195 244 IPR011598 GO:0046983
Stsc30405g00009 358 Coils Coil 228 255 - -
Stsc30405g00009 358 Gene3D - 180 254 IPR036638 GO:0046983
Stsc30405g00009 358 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 189 238 IPR011598 GO:0046983
Stsc30405g00009 358 MobiDBLite consensus disorder prediction 76 117 - -
Stsc30405g00009 358 MobiDBLite consensus disorder prediction 159 191 - -
Stsc30405g00009 358 MobiDBLite consensus disorder prediction 79 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30405g00009 Stsc-Chr30405 68407 70156 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30405g00009 8 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 33.333 4.82e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc30405g00009 HLH 7.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30405g00009 - - adu:107487595 318.546