Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30405g00008 ATGGAGGAGTTAAATGCATCAGCAACCAAATGGTTATCTGATCTGGAGATGGATGAGTACGATTTGTTTTCAGAGTGCCATTTAAAGAACTTGCTGGATGATGATGAAGACAATCAGTTTCTTTCTCATGAGCTGTTGATGAGTGCAGTGCAGGAGGAGGGAGAGGGGGATTTTGAATTGCACCAACAACCAGTTTTCTCTCGCAATTATGAGCAAACATGTTTTGAAGAGAGGCCAAGCAAGCAACTCAGAACCACCAACACTACTACTAGTATTACCTCATCATCATCAAGCATCACTGCCCACCCTCAAAACTTGCCATCTAATTCTTCATCTTCTTCTTCTCCCATCACCTCCCAGATTCTCTCTTTTGAAAACTCCTACAACTCCTCCTCCCCCTCCCCTCCTCTCATTTCCACCCACCTTTATGGCTTTGAATTTGATGTTGTTACTACTAATAATAATAAGGTTTCACTGCAACAACCACAAGCTGGTAATAATACCAAGAAGATGGAACAAACAAGGAAACCCCAAAGTCAAGGGAGTAACAGTAAGAGACAGGGAGCTCAGACTCAGGATCACATCATGGCTGAGAGAAAGCGAAGGGAGAAGCTCAGCCAAAGCTTGATCGCCCTTGCAGCTCTTATTCCAGGCTTAAAAAAGATGGATAAGGCGTCAGTGCTGGGAGATGCAATCAAGTACGTGAAAGAGCTTAAGGAGCGATTGAAGGTTCTAGAAGAAGAAGAAGAACAGAACAAAGTGGATTCTGTTTTGATTGTGAAGAAGCCACATCTCATGAGCAGCAGCAGCGACGATGATTCGTCTTCCTGTGATAATGAGAGCAGCTTGGAAGCAGCAGCGGCACACGTGGAAGCAAGAGTAGCGGCGAAGGAGAAGGAGGTGCTGCTCCGGATCCACTGCAAGAAACAGAAGGGCATTTACGTGAAATTACTCTCCGAGATACAAAGGCTTCACCTCTTTGTTGTCCACAGCAGTGTCCTACCATTCGGGGATTCAGTTCTTGACATAACCATCGTGGCTCAGATGGGCAGAGAATACAAGTTGAGCATTAAAGATCTTGTGAGGAACCTACGCGTGGCTACACAGAAAACGATGTCGTCTTCGTCTTAG 1131 0.4518 MEELNASATKWLSDLEMDEYDLFSECHLKNLLDDDEDNQFLSHELLMSAVQEEGEGDFELHQQPVFSRNYEQTCFEERPSKQLRTTNTTTSITSSSSSITAHPQNLPSNSSSSSSPITSQILSFENSYNSSSPSPPLISTHLYGFEFDVVTTNNNKVSLQQPQAGNNTKKMEQTRKPQSQGSNSKRQGAQTQDHIMAERKRREKLSQSLIALAALIPGLKKMDKASVLGDAIKYVKELKERLKVLEEEEEQNKVDSVLIVKKPHLMSSSSDDDSSSCDNESSLEAAAAHVEARVAAKEKEVLLRIHCKKQKGIYVKLLSEIQRLHLFVVHSSVLPFGDSVLDITIVAQMGREYKLSIKDLVRNLRVATQKTMSSSS 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30405g00008 376 PANTHER BHLH TRANSCRIPTION FACTOR 71 369 - -
Stsc30405g00008 376 MobiDBLite consensus disorder prediction 159 202 - -
Stsc30405g00008 376 Gene3D - 180 254 IPR036638 GO:0046983
Stsc30405g00008 376 SMART finulus 195 244 IPR011598 GO:0046983
Stsc30405g00008 376 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 191 256 IPR036638 GO:0046983
Stsc30405g00008 376 Coils Coil 228 255 - -
Stsc30405g00008 376 Pfam Helix-loop-helix DNA-binding domain 192 238 IPR011598 GO:0046983
Stsc30405g00008 376 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 189 238 IPR011598 GO:0046983
Stsc30405g00008 376 MobiDBLite consensus disorder prediction 76 117 - -
Stsc30405g00008 376 MobiDBLite consensus disorder prediction 159 191 - -
Stsc30405g00008 376 MobiDBLite consensus disorder prediction 79 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30405g00008 Stsc-Chr30405 68407 70156 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30405g00008 8 367 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 32.964 2.39e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc30405g00008 HLH 8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30405g00008 - - adu:107487595 361.688