Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30405g00007 ATGAGTAACAATGATGATGAGAGGCCATCAAAGGCTCTCAAGGCCATCACTACCCCAACCCCAACAAACAGGGACTCCTCATACCTTTTCTCCTTCAACAATAATCATTCTCATGCTACAAACAAGAAGGAGCCAAGACGCAGTAATCAAAGAAGAAGTGGCTCAGCTGGCAGATCCCCCCAACACGCCCATGATCACATCATTGCCGAAAGAATGAGAAGGGAAAAGATCAGCCAACAGTTCATAGCCCTTTCTGCTCTTATTCCAGGTCTCAAAAAGATGGACAAGGCGACGGTATTAGGGGACGCTATAAAGTACGTGAAGCAGCTGCAAGATCAAGTGAAGGTTCTAGAAAACGAAAGGAAAAGGAAAAACGCCGAGTGTGTTTATGTTGTTGAGAAATCAGAGGTGTGTGGAGAGGAAGATGTTTCATCAGACACTTCATCGAATTCTTCAGGGGAAGGGGATGGAAACTCGTACGAGGTGTCAAAAACAGTTAGTAGGTCAGTGCTGCCTGAAGTGGAGGCAAGAGTGTCTGAGAAGAACGTCCTCATTCGGATCCACACCGAGAAACACAAGGGACTCCTAATGCACGTTCTCACACTCATTGACAAACTTCATCTCTGTGTTCTCAATACCACTTCCTTGCCATTTGGAACCTCACTCCTCGACATAACCATCACCGCCGAGATGGATGATAAGTTCAGCTTAAGCGTGACGGAGCTTGCTAGAAACATAAGGGTGGGGCTGTTGCAATTGATGTAG 765 0.4627 MSNNDDERPSKALKAITTPTPTNRDSSYLFSFNNNHSHATNKKEPRRSNQRRSGSAGRSPQHAHDHIIAERMRREKISQQFIALSALIPGLKKMDKATVLGDAIKYVKQLQDQVKVLENERKRKNAECVYVVEKSEVCGEEDVSSDTSSNSSGEGDGNSYEVSKTVSRSVLPEVEARVSEKNVLIRIHTEKHKGLLMHVLTLIDKLHLCVLNTTSLPFGTSLLDITITAEMDDKFSLSVTELARNIRVGLLQLM 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30405g00007 254 Pfam Helix-loop-helix DNA-binding domain 66 111 IPR011598 GO:0046983
Stsc30405g00007 254 Coils Coil 100 127 - -
Stsc30405g00007 254 MobiDBLite consensus disorder prediction 141 164 - -
Stsc30405g00007 254 Gene3D - 55 126 IPR036638 GO:0046983
Stsc30405g00007 254 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 110 IPR011598 GO:0046983
Stsc30405g00007 254 MobiDBLite consensus disorder prediction 1 64 - -
Stsc30405g00007 254 SMART finulus 67 116 IPR011598 GO:0046983
Stsc30405g00007 254 MobiDBLite consensus disorder prediction 142 164 - -
Stsc30405g00007 254 PANTHER BHLH TRANSCRIPTION FACTOR 6 252 - -
Stsc30405g00007 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 129 IPR036638 GO:0046983
Stsc30405g00007 254 MobiDBLite consensus disorder prediction 15 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30405g00007 Stsc-Chr30405 59895 61577 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30405g00007 44 250 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.546 3.36e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc30405g00007 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30405g00007 - - ahf:112748090 336.265