Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30405g00006 ATGATCTCCACCGATGAATCATGGACTAGTTGGCTTTGTGATTTGGAAGAAGATGACTACGCTTTTATCAATGGAGTTGCTAATAATAATAATGCTGGACATATAGCCCCTAATAACTCTAACTCTAACTCGCAAACATCCTTCTCCACAGATAGCACCACCATGAGTAACAATGATGATGAGAGGCCATCAAAGGCTCTCAAGGCCATCACTACCCCAACCCCAACAAACAGGGACTCCTCATACCTTTTCTCCTTCAACAATAATCATTCTCATGCTACAAACAAGAAGGAGCCAAGACGCAGTAATCAAAGAAGAAGTGGCTCAGCTGGCAGATCCCCCCAACACGCCCATGATCACATCATTGCCGAAAGAATGAGAAGGGAAAAGATCAGCCAACAGTTCATAGCCCTTTCTGCTCTTATTCCAGGTCTCAAAAAGATGGACAAGGCGACGGTATTAGGGGACGCTATAAAGTACGTGAAGCAGCTGCAAGATCAAGTGAAGGTTCTAGAAAACGAAAGGAAAAGGAAAAACGCCGAGTGTGTTTATGTTGTTGAGAAATCAGAGGTGTGTGGAGAGGAAGATGTTTCATCAGACACTTCATCGAATTCTTCAGGGGAAGGGGATGGAAACTCGTACGAGGTGTCAAAAACAGTTAGTAGGTCAGTGCTGCCTGAAGTGGAGGCAAGAGTGTCTGAGAAGAACGTCCTCATTCGGATCCACACCGAGAAACACAAGGGACTCCTAATGCACGTTCTCACACTCATTGACAAACTTCATCTCTGTGTTCTCAATACCACTTCCTTGCCATTTGGAACCTCACTCCTCGACATAACCATCACCGCCGAGATGGATGATAAGTTCAGCTTAAGCGTGACGGAGCTTGCTAGAAACATAAGGGTGGGGCTGTTGCAATTGATGTAG 927 0.452 MISTDESWTSWLCDLEEDDYAFINGVANNNNAGHIAPNNSNSNSQTSFSTDSTTMSNNDDERPSKALKAITTPTPTNRDSSYLFSFNNNHSHATNKKEPRRSNQRRSGSAGRSPQHAHDHIIAERMRREKISQQFIALSALIPGLKKMDKATVLGDAIKYVKQLQDQVKVLENERKRKNAECVYVVEKSEVCGEEDVSSDTSSNSSGEGDGNSYEVSKTVSRSVLPEVEARVSEKNVLIRIHTEKHKGLLMHVLTLIDKLHLCVLNTTSLPFGTSLLDITITAEMDDKFSLSVTELARNIRVGLLQLM 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30405g00006 308 Pfam Helix-loop-helix DNA-binding domain 120 165 IPR011598 GO:0046983
Stsc30405g00006 308 PANTHER BHLH TRANSCRIPTION FACTOR 36 306 - -
Stsc30405g00006 308 SMART finulus 121 170 IPR011598 GO:0046983
Stsc30405g00006 308 Coils Coil 154 181 - -
Stsc30405g00006 308 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 115 164 IPR011598 GO:0046983
Stsc30405g00006 308 MobiDBLite consensus disorder prediction 195 218 - -
Stsc30405g00006 308 MobiDBLite consensus disorder prediction 34 60 - -
Stsc30405g00006 308 MobiDBLite consensus disorder prediction 196 218 - -
Stsc30405g00006 308 MobiDBLite consensus disorder prediction 69 92 - -
Stsc30405g00006 308 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 119 183 IPR036638 GO:0046983
Stsc30405g00006 308 Gene3D - 109 180 IPR036638 GO:0046983
Stsc30405g00006 308 MobiDBLite consensus disorder prediction 34 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30405g00006 Stsc-Chr30405 59895 61761 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30405g00006 1 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 35.347 1.30e-48 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc30405g00006 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30405g00006 - - ahf:112748090 380.948