Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30405g00004 ATGATGCAAATTGCATCCAGCAACTACTTGGCTGAATTTGGAATGGAAGAATATCCAGCAAGCAGCTTCCATCATGAGCAGGGATACCCTAACCCGATGATGATGATGATGGATTCTTCATTTGAAGAGATGCTTGATGAGTTTGAGATGGACATGCAATGTTCAATGTCATCAGCATCCCCGGAGTACTGCTATTCAAACTCTGAAACCAAACCACCAACACATGCTTTATTATTCACTCCACAATCTCATCAACTACCTCACTCCTCCTCTAAACCACCGCCACCAACCAATTATAACAAGAAAACCAATACTACTGCCATGCCTTCAAGATCTGCTTCTCCATCACCACCACCGCCCCAACTCATCTCCTTTGAGGCACCCTCTCTTTCTAATTCTTCCAACGATATGGATCACATTCATTTTGCTGCCGCCGCCTTCTACCAACACAACTCTGCTTTCTTTGATAATAAGGTCCCTCCCGCCACAGTTAGAAACCCAATGCAAGCTCAGGAGCACGTAATTGCTGAAAGAAAACGGAGAGAAAAGCTCAGCCAGAGGTTCGTGGCTCTTTCCGCCATGGTCCCTGGCCTCAAGAAGATGGACAAGGCTTCTATATTGGGAGATGCCATAAAATATGTGAAGCAGCTGCAAGAACGAGTGGAGAGTTTGGAGGAAGAGGCAAGAAAGAAAAGGGTTGAATCAGGGGTGGTTGTAAAGAGATGTTTCGTGTTTGTTGATGGTGAAGATAATAATAATGAGAATATAAATGAAAGTTCATCATCTAATAATACATTGCCGGAAATCAAAGCAAGAGTTAGTGGTAAAGACATACTCATCAGAATCCACTGCCATAAACAACAGTGCAATACCACTAGTGCAATAATACTCGCTCAATTAGAGAAGCATCATCTCACTGTTCACACTACCACCTCTTTGCCCTTTGCCAATAACACTCTCGATATCACTATTCTCGCTCAGATGAAGAAGGAATACTCCATGAGGACAGAGGATCTCTTAAGAACCCTACGGGTGGCTTTGACACAGTAA 1050 0.4343 MMQIASSNYLAEFGMEEYPASSFHHEQGYPNPMMMMMDSSFEEMLDEFEMDMQCSMSSASPEYCYSNSETKPPTHALLFTPQSHQLPHSSSKPPPPTNYNKKTNTTAMPSRSASPSPPPPQLISFEAPSLSNSSNDMDHIHFAAAAFYQHNSAFFDNKVPPATVRNPMQAQEHVIAERKRREKLSQRFVALSAMVPGLKKMDKASILGDAIKYVKQLQERVESLEEEARKKRVESGVVVKRCFVFVDGEDNNNENINESSSSNNTLPEIKARVSGKDILIRIHCHKQQCNTTSAIILAQLEKHHLTVHTTTSLPFANNTLDITILAQMKKEYSMRTEDLLRTLRVALTQ 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30405g00004 349 MobiDBLite consensus disorder prediction 95 111 - -
Stsc30405g00004 349 Pfam Helix-loop-helix DNA-binding domain 171 218 IPR011598 GO:0046983
Stsc30405g00004 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
Stsc30405g00004 349 Coils Coil 207 234 - -
Stsc30405g00004 349 MobiDBLite consensus disorder prediction 83 124 - -
Stsc30405g00004 349 Gene3D - 163 233 IPR036638 GO:0046983
Stsc30405g00004 349 PANTHER BHLH TRANSCRIPTION FACTOR 36 348 - -
Stsc30405g00004 349 SMART finulus 174 223 IPR011598 GO:0046983
Stsc30405g00004 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 235 IPR036638 GO:0046983
Stsc30405g00004 349 CDD bHLH_AtNAI1_like 170 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30405g00004 Stsc-Chr30405 54913 56307 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30405g00004 165 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 49.457 2.02e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc30405g00004 HLH 3.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30405g00004 - - aip:107642660 372.089