Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30404g00007 ATGATTATCTCGGTATCTGCCTCCTCAGCTTGCAAACAAGTACAAGAGCCCCTAGTAAGTTTCCAAAAGGGGTTTACAAACATGTTCCATCAAAACCAATATAGGAAGGATAAGGTGGTGGTCATATTGGGGGCCACCGGAACCGGCAAGACCAAGTTGGCCATAGACCTTGCCAACCACTTCCCACCGGCTGAGATTGTTAACTCCGACAAAATGCAAGTCTATGAGGGCCTTGACATTACCACCAATAAGGTTACTCCTGAAGAGGCTCGTGGGGTCCCACATCATCTGCTTGGCACAATTGACCCCAATGCCAACTTTACTGCTCTTGATTTTTGCCGCCATGCCACCTCCGCCGTTGATTCCATCGTCACCCGAGATGCCCTTCCCATCATTGCCGGTGGCTCCAACTCCTATCTCGACGCGCTCATCAACCACCACTCCACTTTTAGACTAAGGTACGAGTGTTGCTTCCTATGGGTGGACGTATCAGTCCCCGTCCTCCATTCATCGCTTCGATCGCGTGTTGATCGCATGATCGAAGCAGGGCAAGTGGAGGAGGTTCGAAAATTCTTCGAGCCATTCGCAGATTACAACAGGGGAATTAGACGAGCGATAGGGGTGCCAGAATTCAACGAGTTTTTAAGAGCAGAGGCCTTAGGAGCAGATGAAGAGACAAAGAAGATGCTCTTAGACATAGCCATTGCAAGAATCAAGGTCAATAACTGCAACCTCGCGAATCGCCAAATCCAAAAGATTCAACGACTCCACAACATCTGGAAGAGAACCATGCATCGCCTCGACGCCACCGAGGTTTTCTTGAACCGTAAATGCTCTAATCATGAATCTCAAACTTCATGGGAGGAACATGTTCTTGCCAAGAGCCTTAGGATTGTTCACAAGTTCCTATACGAGGAAGACAGGATTAATAATAATACTAATAATAAACATGTTGCTGTTCCTGCCGGAATTAATGTTTCTTCTTCTTCGCCGCCTGTGGCGATGGCTGCCGTGGGGGCGGCCACTCATTAG 1032 0.4835 MIISVSASSACKQVQEPLVSFQKGFTNMFHQNQYRKDKVVVILGATGTGKTKLAIDLANHFPPAEIVNSDKMQVYEGLDITTNKVTPEEARGVPHHLLGTIDPNANFTALDFCRHATSAVDSIVTRDALPIIAGGSNSYLDALINHHSTFRLRYECCFLWVDVSVPVLHSSLRSRVDRMIEAGQVEEVRKFFEPFADYNRGIRRAIGVPEFNEFLRAEALGADEETKKMLLDIAIARIKVNNCNLANRQIQKIQRLHNIWKRTMHRLDATEVFLNRKCSNHESQTSWEEHVLAKSLRIVHKFLYEEDRINNNTNNKHVAVPAGINVSSSSPPVAMAAVGAATH 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30404g00007 343 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 36 303 IPR039657 -
Stsc30404g00007 343 FunFam Adenylate isopentenyltransferase 5, chloroplastic 165 264 - -
Stsc30404g00007 343 Pfam IPP transferase 152 251 - -
Stsc30404g00007 343 Pfam IPP transferase 73 146 - -
Stsc30404g00007 343 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 150 IPR027417 -
Stsc30404g00007 343 Gene3D - 36 303 IPR027417 -
Stsc30404g00007 343 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 165 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30404g00007 Stsc-Chr30404 53246 55368 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30404g00007 153 306 C2H2 Transcription Factor Family AT2G27760 30.556 3.11e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30404g00007 K10760 - gmx:100812928 436.417