Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30404g00001 ATGTCTCACATAGCTGTTGAGAGGAACAGGAGAAGGCAGATGAATGAACATCTCAAAGTTTTGAGATCCTTAACCCCATCTTTCTATATTAAAAGGGGAGATCAAGCATCCATAATAGGGGGAGTTATAGAATTCATCAAAGAGCTACACCAAGTGCTTCAAGCTTTGGAGTCCCAGAAAAGGAGAAAAAGCCTAAGCCCTAGCCCAGGCCCAAGCCCAAAAGCACTGCAGGCGGCGTTTCACCAGCACGATAGCCCGTCCGGAGGTGGTTCCTTTAAGGAACTAGGAGCAAGTTGCAACTCTTCAGTTGCGGATGTGGAAGTCAAAATCTCAGGTTGTAATGTGATCCTGAGAGTAATTTCTCACAGGATTCAGGGTCAAGTTGCAAAGATCATTGCTGTTTTGGAATCACTTTCGTTTCAAGTACTTCATCTCAACATCAGTAGCATGGAGGATACAGTTCTCTACCATTTTGTTGTTAAGATAGGGCTGGAATGTGAATTGAGTTTGGAGGAACTAGCAATGGAAGTACAACAAAGCTTCTGCACAGAACCCATTATTACTGCGCTCTCATAA 576 0.4375 MSHIAVERNRRRQMNEHLKVLRSLTPSFYIKRGDQASIIGGVIEFIKELHQVLQALESQKRRKSLSPSPGPSPKALQAAFHQHDSPSGGGSFKELGASCNSSVADVEVKISGCNVILRVISHRIQGQVAKIIAVLESLSFQVLHLNISSMEDTVLYHFVVKIGLECELSLEELAMEVQQSFCTEPIITALS 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30404g00001 191 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Stsc30404g00001 191 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 67 IPR036638 GO:0046983
Stsc30404g00001 191 PANTHER TRANSCRIPTION FACTOR FAMA 1 181 IPR044283 GO:0003700|GO:0010052
Stsc30404g00001 191 MobiDBLite consensus disorder prediction 60 88 - -
Stsc30404g00001 191 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Stsc30404g00001 191 Gene3D - 1 64 IPR036638 GO:0046983
Stsc30404g00001 191 FunFam Transcription factor MUTE 1 66 - -
Stsc30404g00001 191 SMART finulus 4 55 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30404g00001 Stsc-Chr30404 3966 5281 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30404g00001 1 189 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 66.500 1.31e-87 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc30404g00001 HLH 1.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30404g00001 - - gmx:100785890 297.36