Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30403g00001 ATGGCTCCAATGAGTCTGCCACCAGGTTTCAGGTTCCACCCAACAGATGAAGAACTTGTTGCTTACTACTTAGAAAGGAAGATAACAGGTCGCTCTATAGAGCTTGATATCATAGCTGAAGTTGATCTTTACAAATGTGAACCATGGGATTTGCCAGATAAGTCATTTCTGCCAAGCAAGGATATGGAGTGGTATTTCTACAGTCCAAGGGACAGAAAATACCCTAACGGATCGAGAACGAACAGGGCGACGAGAGCGGGGTACTGGAAAGCCACCGGAAAAGACAGGGCGGTGCAGTCTCAGAAGAGAGCAGTTGGTATGAAGAAGACATTGGTGTATTACAAAGGAAGAGCTCCGCATGGGATTAGAACCAACTGGGTCATGCATGAGTATCGGTTGATTGAATCCGTCCCTGGAACTCCTCACTCATCTTTCAAGGATTCCTATTCATTGTGCCGGATTTTCAAGAAGACAATTCAAATTCAAGCCAAACCTAAAGAAGAGGAAGAACATCGAGCATTACTAGGAGAAGATCATTCAAGTGGCATTGAGATTTCAAGAGAAATGGAAACCATGGATGATGATAATAATAACAACAACAAAAACAATAAGAAAGTTCTAAATAGTAATAATAATGAACAATATCCTAATCCTAATAATAATAATAAACTTCCTAATTGTGATGCTTCATCTTCTGATCTCACTCAAGGAACATGCACACCCACAGAAACCGGTATAGCAGATGATTTTCATGCCCAATTTGCTTGTGATGAAGCAAACAGTGCTGCTAATTCTTACTCAATGGGAATACCATACTCCTCCAACCTTTTTCAGGACATAGAGATGTCTATCTATGGAAGCATGCATAATTATCAATTCCCACAAACACCCTTGGTGATGGAAGATTTTCCACAATTAAATTTTGCTGAGACAAAGTCATTGAAGCCAGAGGTGATGAATGAAGACTGCATGTTATTATATGATAGATACAGTAGCAGGGATTGTATGAATGGAACACTAGAAGAAATCATCTCATTGTGTTCCTCTCAAGACAACTCTGTGGCTTTGCCCATGCTAGAATGA 1083 0.4026 MAPMSLPPGFRFHPTDEELVAYYLERKITGRSIELDIIAEVDLYKCEPWDLPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATRAGYWKATGKDRAVQSQKRAVGMKKTLVYYKGRAPHGIRTNWVMHEYRLIESVPGTPHSSFKDSYSLCRIFKKTIQIQAKPKEEEEHRALLGEDHSSGIEISREMETMDDDNNNNNKNNKKVLNSNNNEQYPNPNNNNKLPNCDASSSDLTQGTCTPTETGIADDFHAQFACDEANSAANSYSMGIPYSSNLFQDIEMSIYGSMHNYQFPQTPLVMEDFPQLNFAETKSLKPEVMNEDCMLLYDRYSSRDCMNGTLEEIISLCSSQDNSVALPMLE 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30403g00001 360 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 225 - -
Stsc30403g00001 360 MobiDBLite consensus disorder prediction 164 183 - -
Stsc30403g00001 360 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Stsc30403g00001 360 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Stsc30403g00001 360 MobiDBLite consensus disorder prediction 201 236 - -
Stsc30403g00001 360 FunFam Nac domain-containing protein 86 15 160 - -
Stsc30403g00001 360 Gene3D NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
Stsc30403g00001 360 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Stsc30403g00001 360 MobiDBLite consensus disorder prediction 189 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30403g00001 Stsc-Chr30403 4227 8215 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30403g00001 1 345 NAC Transcription Factor Family AT1G54330 51.585 2.63e-100 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc30403g00001 NAM 4.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30403g00001 - - aip:107611200 596.66