Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30402g00008 ATGCCAGAGGAAACGACGTCGATCGACTATGTTATGGAGGCAGCGTCGGGGCCACACTTCTCCGGTCTCCGCCTCGACGGTCTCCTATCCTCCCCGCCGTCCTCCAACACATCCTCCCCCGCCCACCGCTTCTCCTCCGCACCCGATCTTTCCTCCGCCCTGTCCCCCGATTCCCTCAACCAGCCCTTCGTTATTGGTGTTTCGGGAGGTACTGCTTCAGGGAAGACCACTGTCTGTGACATGATCATTCAGCAGCTCCACGATCACCGCGTTGTTCTTGTCAATCAGGATTCATTTTACCGTGGTTTGAGACCTGAAGAGTTGGAACGAGTTTCGGAGTACAATTTTGATCATCCAGATGCCTTTGACACTGAACAGCTATTAGAGTGCATGGGAAAGCTTATTGCTGGCCAGAGCGTGCAGGTGCCAATTTATGACTTTAAGAAGCACCAACGGTGTTCGGATAGTTTTCGGCAGGTCAATGCTTCTGATGTCATTATATTGGAGGGAATTCTTGTATTCCATGATCAGGGTGTCCGGGATTTAATGAACATGAAGATCTTTGTTGACACAGATGCTGATGTCAGACTAGCTCGTAGGATTAGACGTGACACAGTGGAAAGAGGCAGGGACATAAACTCTGTTCTTGAACAGTACGCAAAGTTTGTTAAGCCTGCCTTTGACGATTTTGTTCTACCATCAAAGAAGTATGCTGATGTGATCATTCCTCGGGGTGGTGATAATCATGTTGCCATTGATTTGATCGTGCAACATATTCGCACAAAGCTTGGTCAACATGATCTGTGCAAAATATATCCAAATGTTTATGTTATTCAATCCACATTCCAGATAAGGGGGATGCATACATTGATCCGTGACAAAGACATATCAAAGCATGATTTTGTATTTTATTCTGATCGGCTTATTCGTCTGGTTGTTGAGCATGGTCTTGGTCATCTTCCATTTACTGAAAAGCAAGTCGTTACTCCAACAGGATCTGTCTATACTGGTGTTGATTTCTGCAAGAAACTATGTGGTGTTTCAATTGTTCGAAGTGGTGAGAGCATGGAGAACGCACTTCGTGCATGTTGTAAGGGCATTAAAATAGGAAAAATTCTGATTCATCGGGATGGAGACAATGGGAAACAGCTTATATATGAGAAGCTTCCCAAGGATATTTCAGAACGTCATGTCTTGCTTCTTGATCCTGTCCTTGCTACAGGTAACTCCGCCAACCAAGCAATTGAGTTACTCATTCAGAAAGGAGTCCCAGAGTCCCACATTATATTCCTCAATCTCATTTCTGCTCCTGAGGGGATCCATTGTGTGTGTAAACGGTTTCCCTCCTTGAAAATTGTCACATCTGAGATTGATGTTGCTTTAAATGATGAGTTTCGGGTTATCCCTGGATTGGGTGAGTTTGGTGATCGCTACTTTGGTACAGATGATTGA 1452 0.4511 MPEETTSIDYVMEAASGPHFSGLRLDGLLSSPPSSNTSSPAHRFSSAPDLSSALSPDSLNQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLRPEELERVSEYNFDHPDAFDTEQLLECMGKLIAGQSVQVPIYDFKKHQRCSDSFRQVNASDVIILEGILVFHDQGVRDLMNMKIFVDTDADVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDKDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLIQKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNDEFRVIPGLGEFGDRYFGTDD 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30402g00008 483 MobiDBLite consensus disorder prediction 28 51 - -
Stsc30402g00008 483 Pfam Phosphoribulokinase / Uridine kinase family 64 250 IPR006083 GO:0005524|GO:0016301
Stsc30402g00008 483 CDD UMPK 64 262 IPR000764 -
Stsc30402g00008 483 FunFam Uridine kinase 266 481 - -
Stsc30402g00008 483 FunFam Uridine kinase 59 265 - -
Stsc30402g00008 483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 255 IPR027417 -
Stsc30402g00008 483 PRINTS Uridine kinase signature 62 79 - -
Stsc30402g00008 483 PRINTS Uridine kinase signature 194 204 - -
Stsc30402g00008 483 PRINTS Uridine kinase signature 230 243 - -
Stsc30402g00008 483 PRINTS Uridine kinase signature 92 103 - -
Stsc30402g00008 483 PRINTS Uridine kinase signature 137 152 - -
Stsc30402g00008 483 PRINTS Uridine kinase signature 208 219 - -
Stsc30402g00008 483 Gene3D - 266 481 IPR029057 -
Stsc30402g00008 483 CDD PRTases_typeI 339 454 IPR000836 -
Stsc30402g00008 483 NCBIfam uridine kinase 62 262 IPR000764 -
Stsc30402g00008 483 Pfam Uracil phosphoribosyltransferase 280 481 - -
Stsc30402g00008 483 MobiDBLite consensus disorder prediction 24 51 - -
Stsc30402g00008 483 PANTHER URIDINE KINASE 42 392 - -
Stsc30402g00008 483 SUPERFAMILY PRTase-like 265 482 IPR029057 -
Stsc30402g00008 483 ProSiteProfiles UvrC family, homology region profile. 168 251 IPR001162 GO:0009381
Stsc30402g00008 483 Gene3D - 58 265 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30402g00008 Stsc-Chr30402 53069 59992 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30402g00008 1 483 PRT Gene Family AT5G40870 86.542 0.0 848
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30402g00008 K00876 - cave:132181173 874.004