Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc30401g00007 | ATGATTTCAAAAATGCCATCTTATAAATTATCTGAACCACTTGCTCAAGAAATCAGTCAGGTTCCTGGTAAAACCACGAGTGGATTGCATAAACAACACAGCTGTCCTGAAAACTTATCAGAATTAGACAAAATCCCCCCAAACAATGGAGGGGAAGTTTGCAGTAGACAGCAGGGAGGTTCTCGCTTGGAAAGAGCTAGGAGCATCCCTACCATGTCTGAGATCTCCTTAGCAAATGTAACTGATACTGAAAGTGAAGAAAACTCAGAGAGTAAGAGCCCACCTAACGTTAAAAAGCCCGAAGGAATTGTAATTCCCGAAGACTTTCTTTGCCCTATATCCTTGGAACTAATGAGGGATCCGGTTATTGTCGCCACCGGTCAGACGTATGAGAGATCTTATATACAGAGATGGATAGATTGTGGGAATACAACTTGTCCTAAAACTCAGCAGAAGCTCCAGCATTTGACACTTACACCAAACTATGTTTTAAGGAGCCTTATTTCTCAGTGGTGTATAGAGCACAACATTGAGCAGCCAACAGGACTAACTAATGGAAAAATAAAGAAGAGCGATGGATCGTTCAGAGATGTCACAGGTGACATAGCGGCAATCGAAGTTCTAGTACGGAAGCTCTCCAGCCGGTCTCTTGAGGATCGTAGAGCGGCCGTAACTGAAATTCGATCACTTTCCAAACGTAGCACGGACAACAGGATACTAATTGCTGAAGCCGGAGCAATTCCAGTTCTAGTCAACCTTCTAACATCCGAAGATGTGTTGACTCAGGACAACGCAGTCACTTCGATCCTCAACCTTTCTATATACGAAAACAACAAGGGACTCATAATGCTTGCAGGTGCCATTCCATCCATTGTCCAGGTTCTCCGAGCTGGAACCATGGAAGCGAGGGAAAACGCTGCAGCAACCCTCTTCAGCTTGTCTCTTGCCGATGAAAATAAAATAATAATCGGTGCCTCAGGCGCTATCCCGGCATTGGTAGAATTGCTCCAAAATGGGAGCCCGAGAGGGAAGAAAGATGCAGCAACGGCATTGTTCAATTTATGTATTTATCAAGGAAACAAAGGCAGGGCTATTAGAGCAGGGATTATAACAGCACTGTTGAAAATGCTTACGGATTCAAGCAAATCAATGGTTGACGAAGCCCTCACAATAATGTCTGTTCTTGCCAGCCATCAAGAAGCAAAGGTAGCCATAGTTAAAGCCAGCACCATACCAGTTTTGATAGATCTCTTGAGGACCGGATTGCCTCGCAACAAAGAGAATGCGGCCGCCATTTTACTCGCATTATGCAAGCGGGATACCGAAAATCTTGCTTCTTTAAGTAGACTTGGTGCTGCAATACCTCTTACGGAACTCTCACGGAGCGGTACAGAGAGGGCAAAAAGGAAAGCTACTTCGTTATTGGAGCATCTTCGCAAATTGCAACAAGTTTGA | 1455 | 0.444 | MISKMPSYKLSEPLAQEISQVPGKTTSGLHKQHSCPENLSELDKIPPNNGGEVCSRQQGGSRLERARSIPTMSEISLANVTDTESEENSESKSPPNVKKPEGIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLISQWCIEHNIEQPTGLTNGKIKKSDGSFRDVTGDIAAIEVLVRKLSSRSLEDRRAAVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQDNAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKVAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDTENLASLSRLGAAIPLTELSRSGTERAKRKATSLLEHLRKLQQV | 484 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc30401g00007 | 484 | MobiDBLite | consensus disorder prediction | 1 | 101 | - | - | |
| Stsc30401g00007 | 484 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 245 | 287 | IPR000225 | GO:0005515 | |
| Stsc30401g00007 | 484 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 104 | 178 | IPR013083 | - | |
| Stsc30401g00007 | 484 | SUPERFAMILY | ARM repeat | 204 | 478 | IPR016024 | - | |
| Stsc30401g00007 | 484 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 368 | 410 | IPR000225 | GO:0005515 | |
| Stsc30401g00007 | 484 | MobiDBLite | consensus disorder prediction | 18 | 34 | - | - | |
| Stsc30401g00007 | 484 | Pfam | Armadillo/beta-catenin-like repeat | 317 | 355 | IPR000225 | GO:0005515 | |
| Stsc30401g00007 | 484 | Pfam | Armadillo/beta-catenin-like repeat | 235 | 273 | IPR000225 | GO:0005515 | |
| Stsc30401g00007 | 484 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 286 | 328 | IPR000225 | GO:0005515 | |
| Stsc30401g00007 | 484 | FunFam | RING-type E3 ubiquitin transferase | 104 | 179 | - | - | |
| Stsc30401g00007 | 484 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 327 | 369 | IPR000225 | GO:0005515 | |
| Stsc30401g00007 | 484 | ProSiteProfiles | U-box domain profile. | 104 | 178 | IPR003613 | GO:0004842|GO:0016567 | |
| Stsc30401g00007 | 484 | PANTHER | U BOX DOMAIN-CONTAINING | 70 | 480 | - | - | |
| Stsc30401g00007 | 484 | Coils | Coil | 484 | 484 | - | - | |
| Stsc30401g00007 | 484 | SMART | arm_5 | 398 | 438 | IPR000225 | GO:0005515 | |
| Stsc30401g00007 | 484 | SMART | arm_5 | 234 | 274 | IPR000225 | GO:0005515 | |
| Stsc30401g00007 | 484 | SMART | arm_5 | 316 | 356 | IPR000225 | GO:0005515 | |
| Stsc30401g00007 | 484 | SMART | arm_5 | 357 | 397 | IPR000225 | GO:0005515 | |
| Stsc30401g00007 | 484 | SMART | arm_5 | 275 | 315 | IPR000225 | GO:0005515 | |
| Stsc30401g00007 | 484 | Pfam | U-box domain | 105 | 176 | IPR003613 | GO:0004842|GO:0016567 | |
| Stsc30401g00007 | 484 | FunFam | RING-type E3 ubiquitin transferase | 183 | 383 | - | - | |
| Stsc30401g00007 | 484 | Gene3D | - | 194 | 279 | IPR011989 | - | |
| Stsc30401g00007 | 484 | Gene3D | - | 280 | 384 | IPR011989 | - | |
| Stsc30401g00007 | 484 | SMART | Ubox_2 | 108 | 171 | IPR003613 | GO:0004842|GO:0016567 | |
| Stsc30401g00007 | 484 | Gene3D | - | 385 | 484 | IPR011989 | - | |
| Stsc30401g00007 | 484 | SUPERFAMILY | RING/U-box | 105 | 179 | - | - | |
| Stsc30401g00007 | 484 | CDD | RING-Ubox_PUB | 106 | 158 | IPR045210 | - | |
| Stsc30401g00007 | 484 | FunFam | RING-type E3 ubiquitin transferase | 384 | 483 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc30401g00007 | Stsc-Chr30401 | 52150 | 55933 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc30401g00007 | 82 | 480 | U-box Gene Family | AT1G71020 | 75.312 | 0.0 | 603 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc30401g00007 | - | - | adu:107484242 | 873.618 |