Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30401g00006 ATGGCCGGCGAACTTGCCGGAGACAGCACGCCGGAGATTCTAGCCATCGTCCACGACATCTCCGCCATGTGTATCGGAGCCCTTGGGTCCGGCTCCTCTGCCGCCGCACCAGCACCCACACCACCACTCCCTACCACCGCCATTGCTGGCGACGCCACCTTCAGGAAGGACTGCACCGATCTGGTGCGACGGATCTCCCTCCTCACGCACCTCTTCGAGGAGATTAAGGAGCTCAACAAGGCTGTTGTCGACTCTGCTTCCAGTTCTGAAAGTGGCGGTGATGGTTCTGATGGCGATGGAGGTGGTGCTGCTGCTGCTTCTTGGTCGTGTGATGTGGTGGTGGCGCTTCAATCGGCAAAGCGATTGCTTTCGGTGGCGAGGAACTTCCGTTCCAATTGCTCCTCTGATGGAGCTGCCAAGACCATTATCTTCCAATTTCAGAGTGTGACATGGAAATTGGAAAAACTACTAAGCAACCTGCCATATGATCATTTAGACATTTCAGAAGAAGTCAGAGAACAGGTGGACCTGGTCAGAACACAATTAAGACGAGCCTCCGATAAATATGGGTTTATGATTTCAAAAATGCCATCTTATAAATTATCTGAACCACTTGCTCAAGAAATCAGTCAGGTTCCTGGTAAAACCACGAGTGGATTGCATAAACAACACAGCTGTCCTGAAAACTTATCAGAATTAGACAAAATCCCCCCAAACAATGGAGGGGAAGTTTGCAGTAGACAGCAGGGAGGTTCTCGCTTGGAAAGAGCTAGGAGCATCCCTACCATGTCTGAGATCTCCTTAGCAAATGTAACTGATACTGAAAGTGAAGAAAACTCAGAGAGTAAGAGCCCACCTAACGTTAAAAAGCCCGAAGGAATTGTAATTCCCGAAGACTTTCTTTGCCCTATATCCTTGGAACTAATGAGGGATCCGGTTATTGTCGCCACCGGTCAGACGTATGAGAGATCTTATATACAGAGATGGATAGATTGTGGGAATACAACTTGTCCTAAAACTCAGCAGAAGCTCCAGCATTTGACACTTACACCAAACTATGTTTTAAGGAGCCTTATTTCTCAGTGGTGTATAGAGCACAACATTGAGCAGCCAACAGGACTAACTAATGGAAAAATAAAGAAGAGCGATGGATCGTTCAGAGATGTCACAGGTGACATAGCGGCAATCGAAGTTCTAGTACGGAAGCTCTCCAGCCGGTCTCTTGAGGATCGTAGAGCGGCCGTAACTGAAATTCGATCACTTTCCAAACGTAGCACGGACAACAGGATACTAATTGCTGAAGCCGGAGCAATTCCAGTTCTAGTCAACCTTCTAACATCCGAAGATGTGTTGACTCAGGACAACGCAGTCACTTCGATCCTCAACCTTTCTATATACGAAAACAACAAGGGACTCATAATGCTTGCAGGTGCCATTCCATCCATTGTCCAGGTTCTCCGAGCTGGAACCATGGAAGCGAGGGAAAACGCTGCAGCAACCCTCTTCAGCTTGTCTCTTGCCGATGAAAATAAAATAATAATCGGTGCCTCAGGCGCTATCCCGGCATTGGTAGAATTGCTCCAAAATGGGAGCCCGAGAGGGAAGAAAGATGCAGCAACGGCATTGTTCAATTTATGTATTTATCAAGGAAACAAAGGCAGGGCTATTAGAGCAGGGATTATAACAGCACTGTTGAAAATGCTTACGGATTCAAGCAAATCAATGGTTGACGAAGCCCTCACAATAATGTCTGTTCTTGCCAGCCATCAAGAAGCAAAGGTAGCCATAGTTAAAGCCAGCACCATACCAGTTTTGATAGATCTCTTGAGGACCGGATTGCCTCGCAACAAAGAGAATGCGGCCGCCATTTTACTCGCATTATGCAAGCGGGATACCGAAAATCTTGCTTCTTTAAGTAGACTTGGTGCTGCAATACCTCTTACGGAACTCTCACGGAGCGGTACAGAGAGGGCAAAAAGGAAAGCTACTTCGTTATTGGAGCATCTTCGCAAATTGCAACAAGTTTGA 2028 0.4714 MAGELAGDSTPEILAIVHDISAMCIGALGSGSSAAAPAPTPPLPTTAIAGDATFRKDCTDLVRRISLLTHLFEEIKELNKAVVDSASSSESGGDGSDGDGGGAAAASWSCDVVVALQSAKRLLSVARNFRSNCSSDGAAKTIIFQFQSVTWKLEKLLSNLPYDHLDISEEVREQVDLVRTQLRRASDKYGFMISKMPSYKLSEPLAQEISQVPGKTTSGLHKQHSCPENLSELDKIPPNNGGEVCSRQQGGSRLERARSIPTMSEISLANVTDTESEENSESKSPPNVKKPEGIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLISQWCIEHNIEQPTGLTNGKIKKSDGSFRDVTGDIAAIEVLVRKLSSRSLEDRRAAVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQDNAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKVAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDTENLASLSRLGAAIPLTELSRSGTERAKRKATSLLEHLRKLQQV 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30401g00006 675 PANTHER U BOX DOMAIN-CONTAINING 55 671 - -
Stsc30401g00006 675 SUPERFAMILY ARM repeat 395 669 IPR016024 -
Stsc30401g00006 675 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 436 478 IPR000225 GO:0005515
Stsc30401g00006 675 Gene3D - 575 675 IPR011989 -
Stsc30401g00006 675 FunFam RING-type E3 ubiquitin transferase 295 370 - -
Stsc30401g00006 675 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 369 IPR013083 -
Stsc30401g00006 675 SMART arm_5 507 547 IPR000225 GO:0005515
Stsc30401g00006 675 SMART arm_5 589 629 IPR000225 GO:0005515
Stsc30401g00006 675 SMART arm_5 548 588 IPR000225 GO:0005515
Stsc30401g00006 675 SMART arm_5 425 465 IPR000225 GO:0005515
Stsc30401g00006 675 SMART arm_5 466 506 IPR000225 GO:0005515
Stsc30401g00006 675 FunFam RING-type E3 ubiquitin transferase 575 674 - -
Stsc30401g00006 675 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 518 560 IPR000225 GO:0005515
Stsc30401g00006 675 MobiDBLite consensus disorder prediction 232 292 - -
Stsc30401g00006 675 Pfam Armadillo/beta-catenin-like repeat 426 464 IPR000225 GO:0005515
Stsc30401g00006 675 Pfam Armadillo/beta-catenin-like repeat 508 546 IPR000225 GO:0005515
Stsc30401g00006 675 Coils Coil 168 188 - -
Stsc30401g00006 675 Pfam U-box domain 296 367 IPR003613 GO:0004842|GO:0016567
Stsc30401g00006 675 SUPERFAMILY RING/U-box 296 370 - -
Stsc30401g00006 675 Gene3D - 385 469 IPR011989 -
Stsc30401g00006 675 Gene3D - 470 574 IPR011989 -
Stsc30401g00006 675 ProSiteProfiles U-box domain profile. 295 369 IPR003613 GO:0004842|GO:0016567
Stsc30401g00006 675 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 477 519 IPR000225 GO:0005515
Stsc30401g00006 675 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 559 601 IPR000225 GO:0005515
Stsc30401g00006 675 FunFam RING-type E3 ubiquitin transferase 374 574 - -
Stsc30401g00006 675 SMART Ubox_2 299 362 IPR003613 GO:0004842|GO:0016567
Stsc30401g00006 675 CDD RING-Ubox_PUB 297 349 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30401g00006 Stsc-Chr30401 52029 55933 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30401g00006 54 674 U-box Gene Family AT1G23030 63.477 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30401g00006 - - adu:107484242 1136.71