Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30401g00002 ATGGAGAGTGGTGAGAGAGAATCTTACTACACAATTCTTGGTGTGAGTTTGGATTCTTCTCTTGAAGAAATAAAGCGTGCTTACAGGAAGCTTGCTATGCAATGGCATCCAGATAGGTGGACGAGAAATCCTTCTTTGCTAGGTGAAGCCAAGCGCAAGTTCCAGCAAATTCAAGAAGCTTATTCAGTATTGTCTGATCCAAAGAAAAGAACGATGTACGATGCTGGGTTGTATGATCCTGAGGAGGAAGAGGATGAGGGATTCTCTGAATTTGTGGAAGAAATGGTGTCCCTTATGGCCCAAGTAAGACAAGAGGAGGAGGAGTGTGGTCTTGAAGATTTGCAGTCCATGTTCATGGAAATGGTTGAAGGATTTGAGTCTCCTGCTACCATGTATTGCACTGTGCCTTCTTCGTCCGTGTTTGAGTTTGATGAATCCCCGTGCGCGAAAAAGGAAGCAAAAAGGATGCGTTTGGATACAAGCATGATGGAGAAAACAGGGTCACGTTTTCAAGCACCAGCTAGCCTTAACTTTGCATCAGTGCATGAAACCAGGGGATGTTGCAATTAG 570 0.4439 MESGERESYYTILGVSLDSSLEEIKRAYRKLAMQWHPDRWTRNPSLLGEAKRKFQQIQEAYSVLSDPKKRTMYDAGLYDPEEEEDEGFSEFVEEMVSLMAQVRQEEEECGLEDLQSMFMEMVEGFESPATMYCTVPSSSVFEFDESPCAKKEAKRMRLDTSMMEKTGSRFQAPASLNFASVHETRGCCN 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30401g00002 189 CDD DnaJ 9 66 IPR001623 -
Stsc30401g00002 189 ProSitePatterns Nt-dnaJ domain signature. 54 73 IPR018253 -
Stsc30401g00002 189 ProSiteProfiles dnaJ domain profile. 8 77 IPR001623 -
Stsc30401g00002 189 PRINTS DnaJ domain signature 49 69 IPR001623 -
Stsc30401g00002 189 PRINTS DnaJ domain signature 10 28 IPR001623 -
Stsc30401g00002 189 PRINTS DnaJ domain signature 28 43 IPR001623 -
Stsc30401g00002 189 PANTHER PUTATIVE, EXPRESSED-RELATED 4 166 - -
Stsc30401g00002 189 SUPERFAMILY Chaperone J-domain 6 80 IPR036869 -
Stsc30401g00002 189 Gene3D DnaJ domain 1 97 IPR036869 -
Stsc30401g00002 189 Pfam DnaJ domain 9 74 IPR001623 -
Stsc30401g00002 189 Coils Coil 88 108 - -
Stsc30401g00002 189 SMART dnaj_3 7 69 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30401g00002 Stsc-Chr30401 5482 7543 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30401g00002 5 75 C2H2 Transcription Factor Family AT1G74250 45.833 1.57e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30401g00002 - - aip:107639293 330.102