Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30400g00004 ATGGATCTTCAAAACCTTTGGTTTATCCTCACCACCTTCTTCTTTCTCTTTGTGCTAATCAACTTAGTTATTAAGAAATCCACTTCTTCTAATAAGACCAAATTACCCCCAGGGCCATGGAAACTACCACTCATAGGAAATATCCAACCACTTGTTGGTCCACTGCCCCATGAAACCTTAAGAAACTTAGCATCCAAATATGGACCCTTAATGTACGTCAAACTAGGAGAAGTCTCCAACATCATAATTTCTTCAACTGAAATGGCACAAGAGATTATGAAAACTCAAGATCTCAACTTTTGTGATAGGCCTCGTGACAGTCTTGTTTCTAGAATTATTGCTTACGACGGCAGAGGCTTTAGCTTCTCTGACTACGGAGACCATTGGAGACAATTAAGAAAGATATGCACCACGGAGCTATTAACAACAAAACGGGTTCAATCTTTTAGGTTTATAAGAGAAGAAGAGGTTTCGGAGATGGTTAAATCAATATCTGAAAGTGAAGGCTCCATTGTTAATCTCACCAACAAGATTTTGTCATTGACTTATGGGATAACAGCTAAGACAGCATTTGGTAAGAGCCATAGTTACCAGCAGCAGAAAGCTTTTGTATCAGCTATGGAGAAATTATTACTGCTAGTAGGAGAAAAGAGTCTAGCTAAGCTCTATCCTTCTGTTAAGGTGTTTCAAGTGTTGAGTAAAACCAAAGCTAGGATGGAAGAACTTCACAAGAAGACTGATAAAATATTACAAGACATCATAGATGATCACAAGAATAATAAAAAAGAAGGTGAAGAAGTAGTTGAAGATCTAGTTGATGTTCTTCTCAAGTTTCAAAAGGAAGACTCAGAATTTCCCTTGGATGATGAAAGTATCAAAGCAGTTGTTCAGGACATGTTTGTTGCTGGTAGTGAAACATCATCAGCGGTTGTGGATTGGGCAATGGCTGAAATGATAAAGAAACCGAAAGTGATGAAAGCAGCACAATCTGAAGTGAGAAAGGTTTATGGTAACAAAGGGTATGTGGATGAATCAGAATTGCACCAATTGACATACCTGAAATGCGTCATCAAAGAAACATTAAGGTTACACCCATCTTTGCCTTTAGCTCCAAGAAGTACCAGAGAGACATGCCAAATCATGGGATACCATATTCCAGCTAATTGTAACATTTTGATCAATGTTTGGGCAATTGGAAGAGATCCAAGGTATTGGGTTGACGCTGAGAATTTTATGCCAGAGAGATTTCTTGATAGCTCAATTGATTACAGAGGCACAAACTTTGAACTTATTCCATTCGGTGGTGGAAGAAGAATGTGTCCCGGAATTGCATTTGCTACACCAAACATGGAGTTGCCACTTGCTAAATTGCTTTACCATTTTGATTGGAAGTTTCCTCATGGAATGAATAATGAAGAGCTTGACATGACTGAATTATTTGGGATGACTGTGAGAAGAAAAAATGATCTCTGTTTGATTCCCATTACTACTCATCAACCTTAA 1503 0.3819 MDLQNLWFILTTFFFLFVLINLVIKKSTSSNKTKLPPGPWKLPLIGNIQPLVGPLPHETLRNLASKYGPLMYVKLGEVSNIIISSTEMAQEIMKTQDLNFCDRPRDSLVSRIIAYDGRGFSFSDYGDHWRQLRKICTTELLTTKRVQSFRFIREEEVSEMVKSISESEGSIVNLTNKILSLTYGITAKTAFGKSHSYQQQKAFVSAMEKLLLLVGEKSLAKLYPSVKVFQVLSKTKARMEELHKKTDKILQDIIDDHKNNKKEGEEVVEDLVDVLLKFQKEDSEFPLDDESIKAVVQDMFVAGSETSSAVVDWAMAEMIKKPKVMKAAQSEVRKVYGNKGYVDESELHQLTYLKCVIKETLRLHPSLPLAPRSTRETCQIMGYHIPANCNILINVWAIGRDPRYWVDAENFMPERFLDSSIDYRGTNFELIPFGGGRRMCPGIAFATPNMELPLAKLLYHFDWKFPHGMNNEELDMTELFGMTVRRKNDLCLIPITTHQP 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30400g00004 500 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 433 442 IPR017972 GO:0005506|GO:0016705
Stsc30400g00004 500 PRINTS P450 superfamily signature 440 451 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30400g00004 500 PRINTS P450 superfamily signature 302 319 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30400g00004 500 PRINTS P450 superfamily signature 355 366 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30400g00004 500 PRINTS P450 superfamily signature 431 440 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30400g00004 500 SUPERFAMILY Cytochrome P450 36 493 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30400g00004 500 Gene3D Cytochrome P450 34 493 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30400g00004 500 PRINTS E-class P450 group I signature 88 109 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30400g00004 500 PRINTS E-class P450 group I signature 430 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30400g00004 500 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30400g00004 500 PRINTS E-class P450 group I signature 291 308 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30400g00004 500 PRINTS E-class P450 group I signature 394 418 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30400g00004 500 PRINTS E-class P450 group I signature 354 372 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30400g00004 500 PRINTS E-class P450 group I signature 440 463 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30400g00004 500 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30400g00004 500 PRINTS E-class P450 group I signature 311 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30400g00004 500 PANTHER CYTOCHROME P450 71B11-RELATED 19 495 - -
Stsc30400g00004 500 Pfam Cytochrome P450 36 482 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30400g00004 500 FunFam Cytochrome P450 99A2 25 495 - -
Stsc30400g00004 500 CDD CYP71-like 66 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30400g00004 Stsc-Chr30400 14583 18440 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30400g00004 3 494 Cytochrome P450 AT3G26310 40.719 6.95e-131 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30400g00004 - - adu:107496273 677.552