Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30400g00003 ATGGCTGAAATGATAAAGAAACCAAAAGTGATGGAAGCAGCACAATCTGAATTTAGAAGGGTTTATGGCAATAAAGGATATGTAGATGAATCAGAATTGCACCAATTGATATACCTGAAATTCATCATCAAAGAAACATTAAGGTTACACCCATCATTGCCTTTGTTAGTTCCGAGAAGTAACAGAGAGGCATGTCAAATCATGAGATACCATATTCCAGCTAATTTAAGGATTGTGATCAATGCTTGGGCAATTGAAAGAGATCCAAGGTATTGGGTTGATGCTGAGAGATTTATGCCGGAGAGATTTTTTGATAGTTCAATTGATTACAAAGGCATTAACTTTGAACTTATTCCATTCGGTGCTGGAAGAAGAATGTGTCCCGGAATTGCATTTGCTACACCAAAGATGGAGTTGCCACTTGCTAAATTGCTTTACCATTTCGATTGGAAGCTTCCGGAAGGAATCAATAATGAAGAACTTGACATGACTGAATTGTTTGGGACCACTGAAGCAATCGCTGAGATAGAGAGTCGGGATGAATCCACAAAGAATCTTTCTCAGAATGATTCACTTGCCCAGGTTCTTGCGAAGGAACATCCCGGACGAGTTCGCGGTGTTGGTCCTGGACTATGTCCTACCAATCCAAGTTATGGGGGACAAACAGAAAAGTATCAGAGGCAAATCGAACAATTACAAGCAGAGGCAGCAGAAAAGACGAAAAAGATACAAATAATGGAGAATATTGTGAGATTCCTCGTGCGGTGGCAAGGAGATGACTTGCCACCAGAAATTGCTTCAGAGATGGATGCTTTAGGTGGTGGAGTGGCTGTCCCGCAAACCAGACCCTCTTCTGACGATCCCGACCTTCTGTCGCCCCCATGA 885 0.4215 MAEMIKKPKVMEAAQSEFRRVYGNKGYVDESELHQLIYLKFIIKETLRLHPSLPLLVPRSNREACQIMRYHIPANLRIVINAWAIERDPRYWVDAERFMPERFFDSSIDYKGINFELIPFGAGRRMCPGIAFATPKMELPLAKLLYHFDWKLPEGINNEELDMTELFGTTEAIAEIESRDESTKNLSQNDSLAQVLAKEHPGRVRGVGPGLCPTNPSYGGQTEKYQRQIEQLQAEAAEKTKKIQIMENIVRFLVRWQGDDLPPEIASEMDALGGGVAVPQTRPSSDDPDLLSPP 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30400g00003 294 FunFam Predicted protein 1 176 - -
Stsc30400g00003 294 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 120 129 IPR017972 GO:0005506|GO:0016705
Stsc30400g00003 294 PRINTS P450 superfamily signature 127 138 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30400g00003 294 PRINTS P450 superfamily signature 118 127 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30400g00003 294 PRINTS P450 superfamily signature 41 52 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30400g00003 294 PRINTS P450 superfamily signature 6 19 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30400g00003 294 Gene3D Cytochrome P450 1 188 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30400g00003 294 MobiDBLite consensus disorder prediction 264 294 - -
Stsc30400g00003 294 PANTHER OS08G0105600 PROTEIN 1 170 - -
Stsc30400g00003 294 Pfam Cytochrome P450 2 169 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30400g00003 294 Coils Coil 222 249 - -
Stsc30400g00003 294 PRINTS E-class P450 group I signature 81 105 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30400g00003 294 PRINTS E-class P450 group I signature 127 150 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30400g00003 294 PRINTS E-class P450 group I signature 117 127 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30400g00003 294 PRINTS E-class P450 group I signature 40 58 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30400g00003 294 SUPERFAMILY Cytochrome P450 1 170 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30400g00003 Stsc-Chr30400 10743 13189 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30400g00003 1 168 Cytochrome P450 AT5G25180 50.595 1.24e-56 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30400g00003 - - adu:107496273 283.108