Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30399g00005 ATGGATGCCAAAGACATCTTGGGATTGCCGAAGAATTCGTTCCCTCCTCTGGACAAGAAGTCTCGTCCTCCCAAAGAGTCTCACAGAAAACCTGATGGAATTTCCCGCGAGGTTTATGCGCTTACTGGTGGATTGGCTCCTCTTATGCCTGCTCTTGATCCATCTCAATTGAAAAAAAAGCCTCCATCAGACGAAAAGGTTGCTTGGCAGTGGCTTGGTATCACCAGTTCTGCTCGTAAAGATAATCTTCATCTCTATCATTGGGTCCGAGTTGTAAATGGCGTTCCACCAACTGGTGACTATTCTTTTGCCAAGTATAACAAGTCTGTTGACATTACAAAATACACAAATGAGGAATATGAGAAGTATTTGACAGATCCTGGGTGGACCAAGGAAGAGACAGATCAGCTGTTTGAATTGTGTGAAAGATTTGATCTCCGATTCATTGTCATAGCTGATAGGTTCCCATCGTCTCGGACTGTGGAAGAACTGAAGGAGAGATATTACAGTGTATCACGGGCTTTATTACTTGCTAGGAATCCATCTTCTGTTGACATTGCATCACATCCTCTTGTTAAGGAACCATACAATATTTCACATGACTTGGAGCGGAAACGAGCAATGTCCTTGGTCCTCTCTCAAACTAGGCAACAAGAGCTAAGAGATGAAGAGGTTCTTGCTGAAGCAAAAAGAATAGCTCAGTCACGCATATCTGCTAAGGTTTCTCAAGAATCTGAGATGGCTGTTGCTTCAAATGCTGGTGTAGAAGTTACAGAGAGGACTATCCCGGGTGAAACTGTATCTCCACTTCCGTCGAATGCACAACATCCATCGATACCTGTGTCTTCTTCAATGTCAACAGAAAATGCATCAACTCTGGCTTCGCTTCGCATTCTTCGTGTATATCTGAGGACCTATGCACTTGAGCAAATGTTGCAAGCTGCAAGCTCATCCGCTGGATTGCGAACTATCAAACGGGTTGAACAAACTTTGCAAGACCTTGGGGTCAATTTGAAACCAAGGGTTCCAACAAAATCCGTTTGTGCAGAACATCTTGAGCTAAGGAAAGAAATACTAACTTTGTTGAATCTTCAAAAGCAGCTGCAATATAAGGAGGCTGAAGGTTTGCCTTTTCGTGAAGGTTCCTACACTGAAACACCAGGAACACCAAAGCATTTTCATCATGGTAAGCAGGATCGAGCATTTGTTCCGGACCCAAGTTTTGGTGGGGAGAGGACTGGCAAAAGGGACCAAAAGCGCAAGGCACCTGGACGGCTTTCAGAAGCACCATCATCGCCAGCCCAGTCTAAAAGACCCAGAAAATTAAAGGCCTCTGATTTTTAG 1344 0.442 MDAKDILGLPKNSFPPLDKKSRPPKESHRKPDGISREVYALTGGLAPLMPALDPSQLKKKPPSDEKVAWQWLGITSSARKDNLHLYHWVRVVNGVPPTGDYSFAKYNKSVDITKYTNEEYEKYLTDPGWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKERYYSVSRALLLARNPSSVDIASHPLVKEPYNISHDLERKRAMSLVLSQTRQQELRDEEVLAEAKRIAQSRISAKVSQESEMAVASNAGVEVTERTIPGETVSPLPSNAQHPSIPVSSSMSTENASTLASLRILRVYLRTYALEQMLQAASSSAGLRTIKRVEQTLQDLGVNLKPRVPTKSVCAEHLELRKEILTLLNLQKQLQYKEAEGLPFREGSYTETPGTPKHFHHGKQDRAFVPDPSFGGERTGKRDQKRKAPGRLSEAPSSPAQSKRPRKLKASDF 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30399g00005 447 MobiDBLite consensus disorder prediction 379 447 - -
Stsc30399g00005 447 SUPERFAMILY Homeodomain-like 126 176 IPR009057 -
Stsc30399g00005 447 Pfam DNA methyltransferase 1-associated protein 1 (DMAP1) 317 374 IPR008468 GO:0005634|GO:0045892
Stsc30399g00005 447 SMART sant 125 174 IPR001005 -
Stsc30399g00005 447 CDD SANT_DMAP1_like 129 171 - -
Stsc30399g00005 447 MobiDBLite consensus disorder prediction 263 285 - -
Stsc30399g00005 447 MobiDBLite consensus disorder prediction 1 34 - -
Stsc30399g00005 447 MobiDBLite consensus disorder prediction 18 34 - -
Stsc30399g00005 447 FunFam DNA methyltransferase 1-associated protein 1 97 184 - -
Stsc30399g00005 447 Gene3D - 98 185 - -
Stsc30399g00005 447 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 1 429 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Stsc30399g00005 447 MobiDBLite consensus disorder prediction 265 285 - -
Stsc30399g00005 447 MobiDBLite consensus disorder prediction 410 424 - -
Stsc30399g00005 447 Pfam SANT/Myb-like domain of DAMP1 101 175 IPR032563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30399g00005 Stsc-Chr30399 29125 36609 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc30399g00005 DMAP1 5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30399g00005 K11324 - cave:132170322 697.197