Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30395g00012 ATGGCTTCTGATCTTGAAGCGAGGGCAAAAGAGGCATTCGTCGATGAAGACTATGAACTAGCTATGGACCTTCTCAATAAGGCCATTGCTGTTCAACCTAACAACGGTCATTACTATGCCGATCGTGCCCAAGCCAACATCAAACTCAACAACCTCACTGAGGCTGTTGCTGATGCAAACAAGGCAATTGAGTTGAATCCTTCTCTCCCAAAAGCATATTTGCGAAAAGGTACTGCATGCATGAAGCTTGAGGAATATCAGTTAGCTAAGGCAGCCCTACAGACGGGTGCTTCATTGGCCCCACGAGATTCAAAATTCACTAATTTGCTCAAACAATGTCATGACCTCATTGCTGAAGAATCTCATGTCATCACACCCATAATACCAGAAAAGCACACCATGATAACACGGGCTGTTTCCGCTAAAGAACTTAGGCAAGAGAATGGTGTTGCAGAGCAGATGACAGTAACAGTTGCTAGACCTAAATACAGGCATGAATTCTACCAAAAACCTGATGAGGTGGTTGTTACCATTTTTGCAAAGGGCATTCCACAGGACAGCGTGACTGTTGACTTTGGTGAACAAATATTAAGTGTTAGCATCGAGGTACCCGGTGAGGATGCATATTCTCTTCAACCTCGCTTATTTGGAAAGATCGTACCTGCCAAATGCCGATATGAAGTTTTGTCTACCAAGATGGAGATCCGCCTTGCAAAAGTAGAACATATCCACTGGACAGCTCTTGAATTCCGAGGAGGTGCAACAGTTCCACAGAGGGCTATTGTTTCATCAGTTACTGACATTCAAAGGCCTTCTTACCCGTCCTCTAAACCAAAAAGAGTAGATTGGGATAAGCTGGAAGCTCAAGTTAAGAAAGAGGAAAAAGAAGAAAAGCTTGACGGTGACGCAGCGCTGAACAAATTCTTCCGCCAGATATATCAAGATGCAGACGAGGACACCAGAAGAGCAATGAGCAAATCATTTGTGGAGTCTAACGGAACTGTACTGTCCACAAACTGGAAAGAAGTGGGATCCAAGAAAGTAGAGGGAAGTGCTCCTGATGGTATGGAGTTGAAGAATTGGGAATATTAA 1092 0.4396 MASDLEARAKEAFVDEDYELAMDLLNKAIAVQPNNGHYYADRAQANIKLNNLTEAVADANKAIELNPSLPKAYLRKGTACMKLEEYQLAKAALQTGASLAPRDSKFTNLLKQCHDLIAEESHVITPIIPEKHTMITRAVSAKELRQENGVAEQMTVTVARPKYRHEFYQKPDEVVVTIFAKGIPQDSVTVDFGEQILSVSIEVPGEDAYSLQPRLFGKIVPAKCRYEVLSTKMEIRLAKVEHIHWTALEFRGGATVPQRAIVSSVTDIQRPSYPSSKPKRVDWDKLEAQVKKEEKEEKLDGDAALNKFFRQIYQDADEDTRRAMSKSFVESNGTVLSTNWKEVGSKKVEGSAPDGMELKNWEY 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30395g00012 363 Pfam Tetratricopeptide repeat 38 68 IPR019734 GO:0005515
Stsc30395g00012 363 Pfam Tetratricopeptide repeat 71 102 IPR019734 GO:0005515
Stsc30395g00012 363 Gene3D Tetratricopeptide repeat domain 1 127 IPR011990 GO:0005515
Stsc30395g00012 363 Gene3D - 161 250 IPR008978 -
Stsc30395g00012 363 Pfam SGS domain 282 361 IPR007699 -
Stsc30395g00012 363 PANTHER PROTEIN SGT1 HOMOLOG 1 361 IPR044563 GO:0051087
Stsc30395g00012 363 FunFam Protein SGT1 homolog A 158 262 - -
Stsc30395g00012 363 SUPERFAMILY TPR-like 5 117 IPR011990 GO:0005515
Stsc30395g00012 363 ProSiteProfiles SGS domain profile. 272 363 IPR007699 -
Stsc30395g00012 363 SUPERFAMILY HSP20-like chaperones 159 257 IPR008978 -
Stsc30395g00012 363 Pfam CS domain 164 239 IPR007052 -
Stsc30395g00012 363 CDD p23_CS_SGT1_like 166 249 - -
Stsc30395g00012 363 ProSiteProfiles CS domain profile. 160 249 IPR007052 -
Stsc30395g00012 363 SMART tpr_5 36 69 IPR019734 GO:0005515
Stsc30395g00012 363 SMART tpr_5 2 35 IPR019734 GO:0005515
Stsc30395g00012 363 SMART tpr_5 70 103 IPR019734 GO:0005515
Stsc30395g00012 363 Coils Coil 42 62 - -
Stsc30395g00012 363 FunFam Protein SGT1 homolog 1 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30395g00012 Stsc-Chr30395 48382 50927 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30395g00012 1 100 U-box Gene Family AT3G07370 30.000 7.08e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30395g00012 K12795 - gmx:100780174 533.102