Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30395g00007 ATGGTATCCAACAACCCGAACCCGAACCCGTCTGAGGGATTGTATCTGGATCCGAGTGAGAGCAAGAAGACGCGGAAGCCATACACTATAACTAAGTCTAGAGAGAGCTGGACAGAACCCGAGCACGACAAGTTCCTCGAAGCTCTTCAACTCTTTGACCGAGACTGGAAAAAAATTGAAGCATTTGTTGGATCCAAGACAATACGTAGCCATGCACAGAAATACTTTCTAAAAGTTCAGAAGAGCGGGACAAGTGAACATCTTCCTCCACCCAGACCAAAACGAAAAGCCACTCATCCATATCCTCAGAAAGCTTCTAAAAATGCACCGGTGCTCGCACAAGTATCTGGATCCTTTCGGTCTTCATCTTCTTTGCTTGAATCTGGATATGTCCTGCAGCCTGATTCTTCAGCAATGCTTAAAACACCTATTCTTAGCACTGCAATGTCTTCCTGGTCAAACAACACCTTGCAGCAAAAAGCCAATGCATTGCACGGTACTAAAGGGCAAAAAGTAAACAATTGTTGCAGTAGCAGCGAAAGCATTCCCAGAGCACAACCACTTGGTGAATCTAATGTTCAAGGGAATAATATCCATCCCTTGAGAGTTCTTCCAGATTTCACTCAAGTGTACCGCTTTATTGGAAGTGTATTCGACCCAAGCGTAACTGGACATCTACAGAAACTAAAAGGGATGGATCCTATAGATGTTGAAACGGTGCTGCTACTGATGAGAAATCTGTCCATTAATTTAAGAAGCCCAGATTTCGAGGATCATAGAAGGTTGCTTGCCTCGTATGAGGTGGAACTCCTCGATACAGACAACTACGTCAATGCAAATAGACCCATGCCTGGTGGGCAGTTGAAGACAGCTACTTAG 879 0.4448 MVSNNPNPNPSEGLYLDPSESKKTRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTIRSHAQKYFLKVQKSGTSEHLPPPRPKRKATHPYPQKASKNAPVLAQVSGSFRSSSSLLESGYVLQPDSSAMLKTPILSTAMSSWSNNTLQQKANALHGTKGQKVNNCCSSSESIPRAQPLGESNVQGNNIHPLRVLPDFTQVYRFIGSVFDPSVTGHLQKLKGMDPIDVETVLLLMRNLSINLRSPDFEDHRRLLASYEVELLDTDNYVNANRPMPGGQLKTAT 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30395g00007 292 SUPERFAMILY Homeodomain-like 28 81 IPR009057 -
Stsc30395g00007 292 SMART sant 33 78 IPR001005 -
Stsc30395g00007 292 CDD SANT 36 76 IPR001005 -
Stsc30395g00007 292 Gene3D - 37 81 - -
Stsc30395g00007 292 MobiDBLite consensus disorder prediction 175 195 - -
Stsc30395g00007 292 MobiDBLite consensus disorder prediction 1 39 - -
Stsc30395g00007 292 MobiDBLite consensus disorder prediction 18 39 - -
Stsc30395g00007 292 MobiDBLite consensus disorder prediction 79 110 - -
Stsc30395g00007 292 Pfam Myb-like DNA-binding domain 34 75 IPR001005 -
Stsc30395g00007 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 80 IPR017930 -
Stsc30395g00007 292 FunFam protein REVEILLE 6 isoform X1 36 81 - -
Stsc30395g00007 292 PANTHER SWI/SNF COMPLEX-RELATED 16 252 - -
Stsc30395g00007 292 NCBIfam myb-like DNA-binding domain, SHAQKYF class 32 78 IPR006447 GO:0003677
Stsc30395g00007 292 ProSiteProfiles SANT domain profile. 32 84 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30395g00007 Stsc-Chr30395 36770 40567 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc30395g00007 Myb_DNA-binding 1.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30395g00007 - - aip:107619038 442.965