Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30394g00001 ATGATCTCGAACAATAATGAGGAGAAGGAGACATGTGAGTTGAGAAAGGGTACGTGGACACCAAGCGAAGACGCCATGCTCATCGAGTACGTAAACAAGTGTGGTGAAGGTAATTGGAGTTCAGTGCGAAAGAATTCTCAACTCATGAGATGTGGCAAAAGTTGTAGGCTTAGATGGTCAAATCATCTAAGACCTGATTTGAAGAAGGGTGCATTCTCTCAAGAAGAGGAGAAACTTCTTGTTGATCTTCATGCTAAGTTTGGAAATAAATGGGCTCTAATAGCTACCAAGCTTCCTGGAAGATCAGACAATGACATCAAGAACTTTTGGAATTCAAAAATGAAGAAGCAACTAAAAGTGCGTTCACCAAATAAACATCCTCCAAAAATGGTTATTCAAGAAGCAGAACGAGAACACTTCTCTTCATCATCACCACCACCACCTCCATCATTTCATTCGGTTTTAGCTTCATGTTACCCCAAAAATAATCTCACTGTTGAACCACCACCCCCAAACATTTCTGCTCATAATCTGAAACAACCTAATCAAAATTCTTCTTTTTCTTACACCAACAACAATGCAAATTTTATGTTGCCGTTAACCCCTATGTCTCCTTATTATAGAGCATCACCACCATCATCACCTCATTGTCAAAATAGTGGTTTATTGAATGATGTGGTGATGGAGGGTAATTCCCTTCGTGGCAAGGGCAAGTCAAAGATGGATGAAAATGAAACCATTGCTATGGCTGTGGAAAAAGAAAAGGATTATGAAGCATGTGAAACCAGAAAAAATCCAACCTCTCCTCAATTGATTCCAACAGAAAAGAATAATCATGGAGCTCCTATGCCGCAATTGGACGATGAATTGATTAGATTACTTAAGAATTATCCATTATATTCGCCAGTGGAAAAGTGGTACCCAGCAGTGGGATTTGAAACTCAAGTTCATGATGAGGGCTTCACTGATGATGATCAAGATTGGGATATTGGTAACATATGGAATATAGATGGATGGTAA 1020 0.3922 MISNNNEEKETCELRKGTWTPSEDAMLIEYVNKCGEGNWSSVRKNSQLMRCGKSCRLRWSNHLRPDLKKGAFSQEEEKLLVDLHAKFGNKWALIATKLPGRSDNDIKNFWNSKMKKQLKVRSPNKHPPKMVIQEAEREHFSSSSPPPPPSFHSVLASCYPKNNLTVEPPPPNISAHNLKQPNQNSSFSYTNNNANFMLPLTPMSPYYRASPPSSPHCQNSGLLNDVVMEGNSLRGKGKSKMDENETIAMAVEKEKDYEACETRKNPTSPQLIPTEKNNHGAPMPQLDDELIRLLKNYPLYSPVEKWYPAVGFETQVHDEGFTDDDQDWDIGNIWNIDGW 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30394g00001 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Stsc30394g00001 339 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Stsc30394g00001 339 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Stsc30394g00001 339 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Stsc30394g00001 339 Gene3D - 70 141 - -
Stsc30394g00001 339 CDD SANT 71 111 IPR001005 -
Stsc30394g00001 339 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Stsc30394g00001 339 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 9 199 - -
Stsc30394g00001 339 MobiDBLite consensus disorder prediction 134 190 - -
Stsc30394g00001 339 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Stsc30394g00001 339 MobiDBLite consensus disorder prediction 176 190 - -
Stsc30394g00001 339 CDD SANT 18 63 IPR001005 -
Stsc30394g00001 339 Gene3D - 13 69 - -
Stsc30394g00001 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 63 IPR017930 -
Stsc30394g00001 339 FunFam MYB-related transcription factor 15 68 - -
Stsc30394g00001 339 MobiDBLite consensus disorder prediction 263 282 - -
Stsc30394g00001 339 SMART sant 15 65 IPR001005 -
Stsc30394g00001 339 SMART sant 68 116 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30394g00001 Stsc-Chr30394 10240 12751 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30394g00001 14 136 MYB Transcription Factor Family AT5G06100 60.163 2.61e-49 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc30394g00001 Myb_DNA-binding 2.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30394g00001 K09422 - ahf:112771967 349.362