Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30393g00001 ATGGAGATAGAATCAGGTGAGAAAGGTTCTTTAGGGACAGGGTTGAGCCCTCTGAGTGAGACTCTTTGGAGAGAAAAGAGAAACACATCAGAGCTAATTGGTGATGTCTCAGCCAGGCTTACATGGAAGGACTTAACTGTGACTGTGACTCTCAGCACGGCGGGTGAGACGCAAAATGTTCTAGAAGGTCTAACCGGTTACGCTGAGCCGGGGACCTTCACTGCTCTAATGGGGCCCTCTGGTTCCGGAAAATCTACCCTTCTTGATGCCTTGTCCGGTCGCCTCGCCGCCAATGCCTTCCTCTCCGGGACCATTCTCCTCAATGGTCACAAAACCAATCTTTCTTTTGGCACTGCTGCTTATGTGACACAAGATGACAGCTTGATTGGGACATTAACAGTGAGAGAGACAATTTCATACTCTGCTTGGTTGCGGCTGCCGGACAAGATGGCGAAGTTGGATAAGGAAGCACTTGTTGAAAGCAGCATAGTGGCAATGGGGCTTCAAGATTGTGCAGACACTGTGATTGGAAACTGGCACTTGCGTGGGATCAGTGGTGGAGAAAAGAGGAGGGTTAGCATTGCCATGGAGATCTTGATGAGACCTAGATTGCTCTTCCTTGATGAACCTACAAGTGGACTTGACAGTGCATCAGCTTTCTTTGTGACTCAAACATTACGTGCCTTAGCAAGGGATGGAAGAACCGTTATAGCTTCAATTCATCAACCTAGCAGTGAAGTTTTCGAACTATTTGATCAATTGTACTTGCTTTCTGGGGGCAAAACTGTCTACTTTGGCCAAGCTTCTGCAGCATATGAGGCATTCTTTGCACAAGCTGGATTTCCATGCCCTGCTTTGAGGAACCCATCTGATCACTTCCTTAGGTGCATCAATTCTGACTTTGACAGAGTCAAGGCCACTCTTAAAGGCTCCATGAAATTCAGGTTTGTGGAAAGTGATGATCCCCTTGATAAGATAACTACTGCTGAAGCTATCAGAACTTTGAATGATTGCTACCGAACTTCACAACATTCTTATGCTGCAATACAGAAAGTGGATGACATATCCAAAGTTAAGGGTACCGTGCTCGACGCCGAAGGAAGTCAGGCTAGTTTCTTGATGCAATCATACACCTTAACCAAGCGTTCGTTGGTTAACATGTCAAGAGATTTTGGTTACTACTGGCTTAGGCTTGTAATTTATATTGTGGTCACTATCTGCATTGGAACCATTTATTTGAACATTGGAACAAGCTATGACTCAATTATGGCAAGGGGCTCGTGTGCATCCTTTGTGTTTGGTTTTGTAACATTCATGTCAATTGGTGGATTCCCTTCATTTGTTGAAGACATGAAGGTTTTCCAAAGGGAGAGGCTTAATGGGCACTATGGTGTGACAGCATTCGTGATAAGCAACACATTATCCGCCATGCCATTCCTGATGCTGATCAGCTTTCTCTCTGGTACCATTTGTTACTTCATGGTTCACCTGCACCCAGGCTTTTCGCATTATGTGTTCTTTGTCTTGTGCCTTTTCGCTAGTGTTATGGTGGTAGAAAGCCTGATGATGGCCATTGCTAGTGTTGTCCCCAACTTCCTCATGGGTATCATAACAGGAGCAGGGATTCAGGGTATATTCATGTTAGTATCTGGCTTCTTTAGGCTGCCGCATGATATCCCAAAGCCATTTTGGCGATATCCAATGTCATATATAAGTTTCCATTTCTGGGCACTACAGGGACAATACCAAAATGATTTGAGGGGCTTGCTATTCAACAACCAGATGTCGGATCTTCCCAAAATACCCGGCGAATACATCTTGGAGAATGTCTTACAGATTGATGTGAACCGGTCGAAGTGGATCGACTTAGGTGTGATCTTGAGCATGATTATTATGTACCGCATCATCTTCTTTTTGATGATTAAGGTGAATGAGGATATCACTCCTTGGGTCAGAGGTTACGTAGCTAGCAGGAGAATGCAGCACAAGAATATTGAACCTGATGCTCTCACTCAGTCTCCATCCCTCAGAGAGTATGCTATTACCAGGGGCACTCATAGAAGAAGGTAG 2070 0.4493 MEIESGEKGSLGTGLSPLSETLWREKRNTSELIGDVSARLTWKDLTVTVTLSTAGETQNVLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSGRLAANAFLSGTILLNGHKTNLSFGTAAYVTQDDSLIGTLTVRETISYSAWLRLPDKMAKLDKEALVESSIVAMGLQDCADTVIGNWHLRGISGGEKRRVSIAMEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALARDGRTVIASIHQPSSEVFELFDQLYLLSGGKTVYFGQASAAYEAFFAQAGFPCPALRNPSDHFLRCINSDFDRVKATLKGSMKFRFVESDDPLDKITTAEAIRTLNDCYRTSQHSYAAIQKVDDISKVKGTVLDAEGSQASFLMQSYTLTKRSLVNMSRDFGYYWLRLVIYIVVTICIGTIYLNIGTSYDSIMARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVISNTLSAMPFLMLISFLSGTICYFMVHLHPGFSHYVFFVLCLFASVMVVESLMMAIASVVPNFLMGIITGAGIQGIFMLVSGFFRLPHDIPKPFWRYPMSYISFHFWALQGQYQNDLRGLLFNNQMSDLPKIPGEYILENVLQIDVNRSKWIDLGVILSMIIMYRIIFFLMIKVNEDITPWVRGYVASRRMQHKNIEPDALTQSPSLREYAITRGTHRRR 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30393g00001 689 FunFam ABC transporter G family member 11 34 279 - -
Stsc30393g00001 689 CDD ABCG_EPDR 37 266 - -
Stsc30393g00001 689 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 273 IPR027417 -
Stsc30393g00001 689 ProSitePatterns ABC transporters family signature. 184 198 IPR017871 GO:0005524|GO:0016887
Stsc30393g00001 689 Gene3D - 34 280 IPR027417 -
Stsc30393g00001 689 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 40 284 IPR003439 GO:0005524
Stsc30393g00001 689 Pfam ABC transporter 63 212 IPR003439 GO:0005524
Stsc30393g00001 689 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 29 662 - -
Stsc30393g00001 689 SMART AAA_5 70 241 IPR003593 GO:0016887
Stsc30393g00001 689 Pfam ABC-2 type transporter 375 581 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30393g00001 Stsc-Chr30393 24157 32375 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30393g00001 71 245 Calmodulin-binding Proteins AT2G36910 33.871 1.20e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30393g00001 K05681 - gmx:100803731 1172.92