Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30392g00010 ATGGCTAAAAACCATTATTCTCTGGTTAGTTCTTTGAGTCTAGTCTTTATCAGCATCTCACTTACCTCATGTTCTGATACAATTACCATTGACAAACCCCTCAGAGATGGTGAGATTCTTGTTTCTAAGAGCAAAACCTTTGCCCTGGGATTCTTCAGTCCAGGCAGATCCACTTCCCGTTACATTGGAATCTGGTACAACAACTTGCCAGAACAAACTGTCATTTGGGTTGCAAACAGAAACACTCCTATCAATGACACATCCGGGGTTCTCTCAATCAACCAACATGGAAATCTAGCACTTCATAACAATTATACCACTCTTCCAATTTGGTCTTCAAATGTTTCATTCACACCCTCCAACAACAACGTTGTAGCTCAACTCTTGGACACAGCAAACTTTGTTCTGCTCCTAAACAATACGGGAACTATCATCTGGCAAAGCTTTGATCAACCTACAGACACCTTCATTCAGCACTTGAAAGTTGGTTTTGACAGAAGAAGTAACAAGACCTGGTTCCTTCAATCATGGAAGACAGATGATGACCCTGCACCTGGTGCATACACGTTGGCATTCAACCCCAATGGGAAGCCACAGCTGTTCTTGTACAACAAGAACATTCCATGGTGGCGAGGAGGATCATGGAACGGTGAGTTGCTCATGGGTATACCAAACATGAAACGAGACATGCTCAAATTCAACATTTCTTATGAGGAAGATGAGAATCATTCAGCACTCTCATACACCATGTTTGATAAGTCCATTGTGAGCAGAATAGTGGTTCAGCAATCAGGTTTCTTTCAAGTGTTCACATGGGATTTCCAGAATAGTCAGTGGAACCGCTACTGGTCAGAGCCAACAGGACTATGTGATAACTATGGAACCTGTGGATCTAACAGTAACTGTGACCCTTTGAACTATGATGAGGTCTTTCAGTGTAGTTGTTTACCCGGGTATGAGCCCAAGTTCCCACGAAACTGGTATGAGAATAAAGATGGGTCAGGAGGGTGTGTGAGGACGAAAGGTGTCTCTGTTTGTGGGAAAGGAGAAGGTTTTGTTAAGATTGAAAGCTTGAAGATTCCTGATACATCTGGGGTAACAGTTAAAAAGGGTTTGAGTTTGAATGAGTGTGAGAAAGAGTGTTTGAGAAACTGCACTTGCAATGCATACTCTGTTGCTGATGTTAGGAATGGTGGAAGTGGGTGCATGACATGGCATGGGGACTTGATGGACATACAGAAGCTCAGTGATCAAGGCCAAGATCTTTTTGTCCGTGTCGACTCGTTTGAACTAGCCAAGTACTATAAGAAACAAAGATTGTTTGGCAAAAACAAGTTGGTAGCGGCTCTGGTAGCTTTCGTGCTTCTGCTTCTCCTTCTAGCGTCCAGTGTGTATTACTTGTGGAAGAAGAGTAAAAACAAAGACAAAATGAAGTGGGAGTTAACTCATGATTCTTCAAGAGAAGAAAACGATGTTCAACGAAAAAGACATCCAAACCTCCCCTTATTCAGTTTTAAAATGATAATGGCAGCCACAGAAAAGTTTTCTCCAGATAATAAGCTTGGTCAAGGTGGATTTGGCTCTGTCTATAAGGGCCAACTCTTTGATGGACCTGAGATAGCAGTAAAAAGACTATCCAAAGATTCAGGTCAAGGAATAGAAGAGTTCATAAATGAAGTCACACTGCTAGTTAAACTCCAACACAGAAATCTTGTGAAGTTGCTCGGTTGTTGCCTTGAGAAGGAAGAAAGGATGCTAGTCTATGAATACCTTCCCAACAAAAGTCTAGACTTCCTTATATTTGATGAAGTTCGAAGGTCATCGTTAGATTGGGGTCAACGCTTTAAAATTATTTCGGGAATTGCTCGAGGTGTATTATATCTTCATCAAGATTCAAGACTGAAAATAATTCACAGAGATCTAAAAGCCAGTAATGTTCTTCTCGATGCTGCAATGAATCCTAAAATTTCAGACTTTGGAATGGCTAGAATATTTGGAGAAGAACAAATCCAAGCAAGTACAAAAAAAGTAGTTGGAACATATGGTTATATGTCACCTGAATATGCAATGGAAGGACGATACTCAACAAAATCTGATGTCTTCAGTTTTGGAGTCTTGTTATTGGAGATTATCGCTGGAAAAAGAAATACAAATTGTGAAAAAGGAAGAGCAGCCTCGTTAATTGGATATGTGTGGAAACTTTGGACTGAAGGAAGAGCCTTGGATGTAGTAGATTCAACACTAGGCCAATCTTATCCTGCTGAAATAGCACTGAGGTGCATTCAAATTGGACTATTGTGTGTGCAAGAAAGCGCCAACAATAGACCTTCCATGTTAGAAGTTGTTTTCATGCTACGAAATGAAGCACCTATTTGCTCACCCCAGAAGCCAGCATTTTTATTCAATGGCAACCTGGACATGAAAGATTCATCAAGTTCTGGAGGAGGATCTTCAGTAAATGAAGTGACCGTAACTACCATCTCTGCTAGATAA 2493 0.4083 MAKNHYSLVSSLSLVFISISLTSCSDTITIDKPLRDGEILVSKSKTFALGFFSPGRSTSRYIGIWYNNLPEQTVIWVANRNTPINDTSGVLSINQHGNLALHNNYTTLPIWSSNVSFTPSNNNVVAQLLDTANFVLLLNNTGTIIWQSFDQPTDTFIQHLKVGFDRRSNKTWFLQSWKTDDDPAPGAYTLAFNPNGKPQLFLYNKNIPWWRGGSWNGELLMGIPNMKRDMLKFNISYEEDENHSALSYTMFDKSIVSRIVVQQSGFFQVFTWDFQNSQWNRYWSEPTGLCDNYGTCGSNSNCDPLNYDEVFQCSCLPGYEPKFPRNWYENKDGSGGCVRTKGVSVCGKGEGFVKIESLKIPDTSGVTVKKGLSLNECEKECLRNCTCNAYSVADVRNGGSGCMTWHGDLMDIQKLSDQGQDLFVRVDSFELAKYYKKQRLFGKNKLVAALVAFVLLLLLLASSVYYLWKKSKNKDKMKWELTHDSSREENDVQRKRHPNLPLFSFKMIMAATEKFSPDNKLGQGGFGSVYKGQLFDGPEIAVKRLSKDSGQGIEEFINEVTLLVKLQHRNLVKLLGCCLEKEERMLVYEYLPNKSLDFLIFDEVRRSSLDWGQRFKIISGIARGVLYLHQDSRLKIIHRDLKASNVLLDAAMNPKISDFGMARIFGEEQIQASTKKVVGTYGYMSPEYAMEGRYSTKSDVFSFGVLLLEIIAGKRNTNCEKGRAASLIGYVWKLWTEGRALDVVDSTLGQSYPAEIALRCIQIGLLCVQESANNRPSMLEVVFMLRNEAPICSPQKPAFLFNGNLDMKDSSSSGGGSSVNEVTVTTISAR 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30392g00010 830 Gene3D Phosphorylase Kinase; domain 1 474 590 - -
Stsc30392g00010 830 ProSitePatterns Protein kinases ATP-binding region signature. 521 543 IPR017441 GO:0005524
Stsc30392g00010 830 ProSiteProfiles Protein kinase domain profile. 515 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30392g00010 830 ProSiteProfiles EGF-like domain profile. 286 325 IPR000742 -
Stsc30392g00010 830 SMART ntp_6 347 426 IPR003609 -
Stsc30392g00010 830 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 216 IPR036426 -
Stsc30392g00010 830 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Stsc30392g00010 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 636 648 IPR008271 GO:0004672|GO:0006468
Stsc30392g00010 830 Pfam D-mannose binding lectin 73 178 IPR001480 -
Stsc30392g00010 830 CDD STKc_IRAK 521 785 - -
Stsc30392g00010 830 ProSiteProfiles Bulb-type lectin domain profile. 25 149 IPR001480 -
Stsc30392g00010 830 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 149 - -
Stsc30392g00010 830 Pfam PAN-like domain 346 412 IPR003609 -
Stsc30392g00010 830 CDD PAN_AP_plant 346 426 - -
Stsc30392g00010 830 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 591 792 - -
Stsc30392g00010 830 Gene3D Hepatocyte Growth Factor 344 429 - -
Stsc30392g00010 830 Gene3D - 20 149 IPR036426 -
Stsc30392g00010 830 ProSiteProfiles PAN/Apple domain profile. 346 427 IPR003609 -
Stsc30392g00010 830 SUPERFAMILY Protein kinase-like (PK-like) 498 800 IPR011009 -
Stsc30392g00010 830 CDD B_lectin 31 152 IPR001480 -
Stsc30392g00010 830 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 777 - -
Stsc30392g00010 830 PIRSF SRK 1 830 IPR024171 GO:0004674
Stsc30392g00010 830 Pfam Protein tyrosine and serine/threonine kinase 518 782 IPR001245 GO:0004672|GO:0006468
Stsc30392g00010 830 Gene3D Transferase(Phosphotransferase) domain 1 591 793 - -
Stsc30392g00010 830 SMART blect_4 31 152 IPR001480 -
Stsc30392g00010 830 SMART serkin_6 515 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30392g00010 830 Pfam S-locus glycoprotein domain 210 323 IPR000858 GO:0048544
Stsc30392g00010 830 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 479 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30392g00010 Stsc-Chr30392 46525 50008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30392g00010 503 830 Receptor kinase-like Gene Family AT4G11530 55.193 8.41e-125 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc30392g00010 PK_Tyr_Ser-Thr 6.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30392g00010 - - tpra:123914661 1186.02