Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30392g00009 ATGGGGTTCTTCAGCCCAGGCAAGTCAACTTCCCGTTACGTCGGAATCTGGTACAACAATCTGCCACAACAAACTGTTATTTGGGTTGCAAACAGAAACACTCCCATCAATGACACATCTGGAGTCCTCTCAATCAACCAACATGGAAATCTAGCACTCCATCACAACCATAGCATTCTTCCAATTTGGTCTACCAATGTTTCAACCACACCCTCTGATACAAACAAAGTTATAGCTCAACTCACAGACATAGCTAACCTTGTTCTGATCCTTAACGACACAAAAGCTGTCATCTGGCAAAGCTTTGATCAACCCACAGATACTTTGATTCCCCACCTGAGATTAGGATTTGACAGAGGAACAAACCAGAGTTGGGTCATCCAATCTTGGAAAACAGATGATGATCCTTCACCTGGTGACTTCACATTGAAGTTCAGCACCAGTGGTATGCCACAGTTGTTCTTATACAACAAGAACCGTCCATGGTGGCGAGGAGGACCATGGAACGGTGAGTTTTTCATGGGTATACCAAACATCAAACGAGATAACAACATTTTCAATGTTTCCTGTGAGGAAGATGAGAACCATGCAGCACTCTCATATAACACCTATGACAAATCGGTTCCCAGTTGGGTGGTGGTTCAGCAGTCGGGTTTCTTTCAAGTGTTCACTTGGGATAACCAGAGGAATCATTGGAACCGGTACTGGTCAGAGCCTACTGGTCAATGTGATAACTATGGAACATGTGGACCTAACAGCAACTGTGACCCTTTGAACTATGAGGACTTTCAGTGCACTTGTTTGCCCGGGTTTGAACCGAAATTCCCAAGTAACTGGTATGAGAATAGAGATGGATCAGGAGGGTGTGTGAGGAAGAAAGGTGTATCTGTTTGTGGGAGTGGAGAAGGGTTTGTGAATATTGAAGGATTGAAGGTTCCTGATACATCTGTGGCTATAGTTAAGGAGGGTTTGAGCTTGGAGGAGTGTGAGAGGGAATGCTTGAGAAAATGTTCTTGCAGTGCTTATGCAGTTGCTAATTTGGCCAATGGTGGAAGTGGATGTTTTTCATGGCATGGTGATTTGTTGGACATAGAGAAGCTTAGTGATCAAGGCCAAGAATTATTTGTACGTGTTGATGCTGTTGAATTAGCTAATTATTACAAGAAAAGAAAAGAAGCATTTGGTAAGAAAAATATTGTAGGGGTTCTGGTAGCTTCTTTGTTTTCAGTTCTCCTTATTCTGGCCTGTGTATATTACTTGCGGTTGCAGAAGAAAAAGAAAAAAGATAAGATCCAAAGGTCATCATTAGATTGGGATAAGCGTTTTGAAATTATTTATGGGATTGCTCGAGGTGTATTATATCTTCATCAAGATTCAAGACTAAAAATAATTCACAGAGATCTCAAAGCTAGCAATGTTCTCCTTGACACTGCAATGAATCCGAAAATCTCAGACTTTGGCATGGCTAGAATATTTGGCGAAGATCAAATCCAAGATAGAACGAGAAGAGTAGTCGGAACATATGGTTATATGTCACCCGAATATGCAATGGAAGGACGATATTCAACAAAATCAGACGTCTTTAGTTTCGGAGTCTTACTTCTAGAGATTATTGCTGGAAAGAGGAACACTGATGGTGGTGACAAAGAAAGAGACTCCCCAAATTTAATTGGATACGTATGGAGACTATGGACAGAAGGAAGGGCTTTGGATATGATAGACACAACACTAGATCAATCTTATCCTCCTGAGATAGCTCTGAAGTGCATTCAGATTGGACTATTGTGTGTGCAAGAAAATGTCAACAAGAGACCTTCCATGTCGGAAGTTGTTTTCATGTTAGGGAATGAAGCACCTGTTTGTCCACCTCAAAAGCCAGCATTTTTATTCAATGGCAACCAAGGTGACTTGCAAGAGTCATCAACATCTGGAGGAGGATCCTCAATTAATGAAGTAACAGCAACTACAATCTCTGCTAGATAA 1983 0.414 MGFFSPGKSTSRYVGIWYNNLPQQTVIWVANRNTPINDTSGVLSINQHGNLALHHNHSILPIWSTNVSTTPSDTNKVIAQLTDIANLVLILNDTKAVIWQSFDQPTDTLIPHLRLGFDRGTNQSWVIQSWKTDDDPSPGDFTLKFSTSGMPQLFLYNKNRPWWRGGPWNGEFFMGIPNIKRDNNIFNVSCEEDENHAALSYNTYDKSVPSWVVVQQSGFFQVFTWDNQRNHWNRYWSEPTGQCDNYGTCGPNSNCDPLNYEDFQCTCLPGFEPKFPSNWYENRDGSGGCVRKKGVSVCGSGEGFVNIEGLKVPDTSVAIVKEGLSLEECERECLRKCSCSAYAVANLANGGSGCFSWHGDLLDIEKLSDQGQELFVRVDAVELANYYKKRKEAFGKKNIVGVLVASLFSVLLILACVYYLRLQKKKKKDKIQRSSLDWDKRFEIIYGIARGVLYLHQDSRLKIIHRDLKASNVLLDTAMNPKISDFGMARIFGEDQIQDRTRRVVGTYGYMSPEYAMEGRYSTKSDVFSFGVLLLEIIAGKRNTDGGDKERDSPNLIGYVWRLWTEGRALDMIDTTLDQSYPPEIALKCIQIGLLCVQENVNKRPSMSEVVFMLGNEAPVCPPQKPAFLFNGNQGDLQESSTSGGGSSINEVTATTISAR 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30392g00009 660 SUPERFAMILY Protein kinase-like (PK-like) 431 628 IPR011009 -
Stsc30392g00009 660 Pfam PAN-like domain 298 364 IPR003609 -
Stsc30392g00009 660 Gene3D Hepatocyte Growth Factor 296 376 - -
Stsc30392g00009 660 SUPERFAMILY alpha-D-mannose-specific plant lectins 26 136 IPR036426 -
Stsc30392g00009 660 ProSiteProfiles EGF-like domain profile. 239 277 IPR000742 -
Stsc30392g00009 660 SMART blect_4 1 105 IPR001480 -
Stsc30392g00009 660 ProSiteProfiles PAN/Apple domain profile. 298 379 IPR003609 -
Stsc30392g00009 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Stsc30392g00009 660 ProSiteProfiles Bulb-type lectin domain profile. 1 102 IPR001480 -
Stsc30392g00009 660 Gene3D Transferase(Phosphotransferase) domain 1 421 619 - -
Stsc30392g00009 660 Gene3D - 1 102 IPR036426 -
Stsc30392g00009 660 SMART serkin_6 331 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30392g00009 660 CDD B_lectin 1 105 IPR001480 -
Stsc30392g00009 660 Pfam S-locus glycoprotein domain 163 275 IPR000858 GO:0048544
Stsc30392g00009 660 Pfam D-mannose binding lectin 25 131 IPR001480 -
Stsc30392g00009 660 Pfam Protein tyrosine and serine/threonine kinase 409 612 IPR001245 GO:0004672|GO:0006468
Stsc30392g00009 660 ProSiteProfiles Protein kinase domain profile. 292 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30392g00009 660 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 102 - -
Stsc30392g00009 660 SMART ntp_6 299 378 IPR003609 -
Stsc30392g00009 660 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 1 425 - -
Stsc30392g00009 660 MobiDBLite consensus disorder prediction 631 660 - -
Stsc30392g00009 660 CDD PAN_AP_plant 298 378 - -
Stsc30392g00009 660 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 423 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30392g00009 Stsc-Chr30392 42265 45707 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30392g00009 421 660 Receptor kinase-like Gene Family AT4G23280 49.590 1.16e-75 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc30392g00009 PK_Tyr_Ser-Thr 2.3e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30392g00009 - - vvi:100855362 658.677