Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30392g00007 ATGGGAAGAGGAAGAGGTATCACTAGCCTCCTCTGTTTCTTCCTTTTTTGGATCTCCAAACCTTGTACTTGTACTACTTCTTCAGATACCTTAACAAAATCCCAAATCCTAAGAACAAACCAAACCCTCTTGTCTCCAAAGGGAATCTTCCAACTCGGATTCTTTTCCCCCACCGAAGATGATTCCACCTCCTCCTTGTACCTCGCCATATGGTACAACAACATTCATCCCAAAACAGTTGTTTGGGTTGCAAACAGAGACGCCCCACTTCAGAGCTCCACAGGGTTTCTCCAAATAGCCCAAACAGGAACCATCAACATAGTCCTCACCGATAATAACAACCATTCCTTCAAATCCATATGGTCTTCAAATCAAACCACACAACAACCACCTCAGAACCCACTTCTCCAGCTCTTAGATTCAGGGAACCTTGTTCTAAGAGAATCAAACGACCCGTCAAAGTATCTATGGCAGAGCTTCGATTACCCTACGGATACTCTGTTACCGGGAATGAAATTGGGTTGGAACTTAGACACAAACACGGAGAAGCACCTCACTTCATGGAAGTTCCAAGACCAAGACCCTTCAACCGGAGATTACTCTTTCAAGATGAACTTCCATGGCCTCCCTGAGATTTTCCTCTGGAACAAGAACAAGATAACATACAGAAGCGGGCCATGGAACGGCCAGAGATTCAGCGGCGTGCCAGAGATGCAACCCGTAACGGATTCAATCAAATTCACATTCCACGTTGATGAACACCAAGTGTACTACACATTCTTCATCGGGAACGAGTCGTTGTTCTCGAGGCTCTTGGTGAGTTCTTCCGGGGAGCTTCAGAGGCTGACGTGGATAGAGAGCACGCAGGCATGGAACAAATTCTGGTACGCTCCCAAGGACCAATGCGACTATTACAGGGAGTGTGGGGCCTACGGCGTTTGCGACACGAATGCGTCGCCGGTGTGCCAGTGTGTGAACGGGTTCAAGCCGAGGAACCCGGAGGCGTGGAATCTTCGAGATGGATCGAATGGGTGTGTTCGGAAGAGGGAGTTGGAGTGTGAGAGTGACGGGTTCTGGAAGATGGGGAATGTTAAGTTGCCGGAGACGACGAGGGTGTTTGTGAACCGGAGCATGGGGCTCTTGGAATGCAGAGAAATGTGCCGGAGGAACTGCTCTTGTAGTGGTTATGCGAATGTAGAGATCACCGGTGGGGGTACTGGATGTGTGACGTGGATTGGGGATCTCTTCGATATCAGGCAGTATCCTGCCGGTGGACAAGATCTCTATGTCAGGTTAGCAGCTTCTGAGTTAGCTGACATAGAATCTGGAGATGGTTCTCACAACACAGCTAAGGTTGTTGGCATTATAGTTGGTGCTACAGCTTTTGTAATTTTGGTGTTGGCTATATGTTTCTTGTTATGGAAGAAAAGGAAATTCCCATGCATGTTGGAGAGGGAGACAGTACACAGAGGTTCTCTGGAAAGGAGTCAGGATTTGTTGATGACTGAAGTGGTTTTTTCAAGCAATAGAGAACAGTCTAGTGAAAGGAAAATCGATGACTTAGAGTTGCCATTGTTTGATTTTAACACCTTAACAATGGCTACAAAGAACTTCTCTGAAGAGAATAAACTTGGACAAGGAGGATTTGGTGTTGTTTATAAAGGCAGGTTGATGGAAGGCCAGGAAATCGCTGTGAAGAGGCTTTCAAAAAATTCTGGACAAGGAGTTGAAGAGTTTAAGAATGAGGTAAAGTTGATTGTCAAACTTCAACACCGGAATCTTGTCCGGCTGCTTGGTTGCAGCATTCAGATGGACGAAAAGGTGCTTGTGTATGAGTACTTGGAAAATAGAAGCCTTGATGGGATTTTATTTGACAAGGCAAAAAGCTCCTCGTTAGATTGGTCAAGGCGCTTCAACATTATTTGTGGAATTGCTAGAGGGCTTCTTTATTTGCACCATGATTCCAGATTTAGGATCATCCATAGAGATCTCAAGGCAAGCAACATCCTACTCGACAAGGAAATGAATCCCAAAATATCAGATTTTGGGATGGCTAGAATTTTTAATACAAATCAAACGGAAGCTAATACAATGAGAGTTGTTGGAACATATGGCTACATGTCCCCTGAATATGCTATGGATGGAATCTTCTCGGTAAAGTCAGATGTTTTCAGTTTTGGGGTGTTAGTGTTGGAGATTATAGCTGGAAAAAAGAACAGAGGATTCTACTATGCAAATGCTGAGTTGAATCTTCTAGGGCATGCATGGAAGCAGTGGAAAGAAGGAAATGCATTGGAACTGATTGATTCATCAATTGACAATTCATATTCATCATCTGAGGTTCTTAGATGTGTACAAGTGGGGCTCTTATGCGTGCAAGAGCGTGCAGAAGACAGACCAACAATGTCTTCAGTGGTCTTGATGCTAAGTAGTGAAACTGCATCAATGCCGCAACCCAAAAACCCTGGGTTTTGCCTGGGAAGGAATCCAATGGAAACTGATTCTTCTTCAAGTAGGCAAGATGGAACGTTCACTGTGAACCAAGTCACAGTCACAATGCTAAATGCCAGGTAG 2574 0.4487 MGRGRGITSLLCFFLFWISKPCTCTTSSDTLTKSQILRTNQTLLSPKGIFQLGFFSPTEDDSTSSLYLAIWYNNIHPKTVVWVANRDAPLQSSTGFLQIAQTGTINIVLTDNNNHSFKSIWSSNQTTQQPPQNPLLQLLDSGNLVLRESNDPSKYLWQSFDYPTDTLLPGMKLGWNLDTNTEKHLTSWKFQDQDPSTGDYSFKMNFHGLPEIFLWNKNKITYRSGPWNGQRFSGVPEMQPVTDSIKFTFHVDEHQVYYTFFIGNESLFSRLLVSSSGELQRLTWIESTQAWNKFWYAPKDQCDYYRECGAYGVCDTNASPVCQCVNGFKPRNPEAWNLRDGSNGCVRKRELECESDGFWKMGNVKLPETTRVFVNRSMGLLECREMCRRNCSCSGYANVEITGGGTGCVTWIGDLFDIRQYPAGGQDLYVRLAASELADIESGDGSHNTAKVVGIIVGATAFVILVLAICFLLWKKRKFPCMLERETVHRGSLERSQDLLMTEVVFSSNREQSSERKIDDLELPLFDFNTLTMATKNFSEENKLGQGGFGVVYKGRLMEGQEIAVKRLSKNSGQGVEEFKNEVKLIVKLQHRNLVRLLGCSIQMDEKVLVYEYLENRSLDGILFDKAKSSSLDWSRRFNIICGIARGLLYLHHDSRFRIIHRDLKASNILLDKEMNPKISDFGMARIFNTNQTEANTMRVVGTYGYMSPEYAMDGIFSVKSDVFSFGVLVLEIIAGKKNRGFYYANAELNLLGHAWKQWKEGNALELIDSSIDNSYSSSEVLRCVQVGLLCVQERAEDRPTMSSVVLMLSSETASMPQPKNPGFCLGRNPMETDSSSSRQDGTFTVNQVTVTMLNAR 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30392g00007 857 CDD PAN_AP_plant 351 433 - -
Stsc30392g00007 857 CDD STKc_IRAK 544 809 - -
Stsc30392g00007 857 Pfam PAN-like domain 353 418 IPR003609 -
Stsc30392g00007 857 SMART ntp_6 353 432 IPR003609 -
Stsc30392g00007 857 Gene3D Phosphorylase Kinase; domain 1 511 613 - -
Stsc30392g00007 857 ProSiteProfiles Bulb-type lectin domain profile. 28 159 IPR001480 -
Stsc30392g00007 857 Gene3D - 23 160 IPR036426 -
Stsc30392g00007 857 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 229 IPR036426 -
Stsc30392g00007 857 ProSitePatterns Serine/Threonine protein kinases active-site signature. 659 671 IPR008271 GO:0004672|GO:0006468
Stsc30392g00007 857 ProSiteProfiles Protein kinase domain profile. 538 824 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30392g00007 857 PIRSF SRK 5 857 IPR024171 GO:0004674
Stsc30392g00007 857 Pfam S-locus glycoprotein domain 222 331 IPR000858 GO:0048544
Stsc30392g00007 857 ProSitePatterns Protein kinases ATP-binding region signature. 544 566 IPR017441 GO:0005524
Stsc30392g00007 857 Pfam D-mannose binding lectin 79 189 IPR001480 -
Stsc30392g00007 857 Gene3D Transferase(Phosphotransferase) domain 1 614 821 - -
Stsc30392g00007 857 SMART serkin_6 538 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30392g00007 857 Pfam Protein tyrosine and serine/threonine kinase 541 807 IPR001245 GO:0004672|GO:0006468
Stsc30392g00007 857 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 11 800 - -
Stsc30392g00007 857 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 503 613 - -
Stsc30392g00007 857 ProSiteProfiles PAN/Apple domain profile. 353 433 IPR003609 -
Stsc30392g00007 857 SMART blect_4 34 163 IPR001480 -
Stsc30392g00007 857 Pfam Domain of unknown function (DUF3403) 811 857 IPR021820 GO:0004674
Stsc30392g00007 857 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 614 817 - -
Stsc30392g00007 857 ProSiteProfiles EGF-like domain profile. 298 334 IPR000742 -
Stsc30392g00007 857 Pfam Receptor serine/threonine kinase 494 528 IPR022126 GO:0004674
Stsc30392g00007 857 CDD B_lectin 34 163 IPR001480 -
Stsc30392g00007 857 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 160 - -
Stsc30392g00007 857 SUPERFAMILY Protein kinase-like (PK-like) 518 809 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30392g00007 Stsc-Chr30392 35022 41299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30392g00007 526 857 Receptor kinase-like Gene Family AT4G11530 57.270 6.27e-132 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc30392g00007 PK_Tyr_Ser-Thr 9.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30392g00007 - - gmx:106799702 1305.81