Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30392g00003 ATGACGTCACACCCACTCCACCCCTCCTGCGACTTCGACACAGACTCCGTCGCCTCCTCCCCTCGCTCCGACCAATTCCACGACAACCCTCACCCTCAACGAGTCCGCTTCATGTGCAGCTTCGGCGGCAAGATTCTTCCTCGCCCTCACGACAACCAGCTCCGCTACGTCGGCGGGGACACCCGCATAGTTGCCGTCAATCGCTCCATCTCCTTCCCGGCCTTCCTCCTCAAGCTCTCCAAGCTATCAGGCATGACCAACATAACCGCCAAGTACCAGCTTCCCAACGAGGACCTCGACGCCCTTATTTCTGTCACCACCGACGAAGACGTCGAGAACATGATGGACGAGTACGACCGCATCGCACACAACCTAAACCCCCGATCCGCTCGTCTCCGCCTCTTCCTCTTTCCCGAATCCTCCGCCGCCGACGACACTTCCCTAGCCGGCAGCATCGGCTCCCTCCTCAACGGCTCCGTTAAACGGGAGAGCTGGTTCCTCGACGCCCTCAACGGCGGCGTCTCAGCCCTCGAGCGCGGCCGCTCCGAAGCCTCCTCCATGGTCTCGGAGGTCCCCGATTACCTCTTCGGGTTGGACAACTCCGAAGAAACGCCAAGCAACCGTGAATTACGACACAAGGACCGAACCGGTCTCTATTCGGATCCGGGTTCTCCTGCCCCGGTTGCGTCTCAATTTTCGTCCACATCATCGGTGCCGTGTGTGCCGTCTATCCCCAACCTTCCACCGGTTAAAACCAAACTCGCGAACCCTGCTCCTGAAGTGGAGTCTAAAGAGATTCAAATCGAAGCTGAACCAGGTCCGCCACCACAACCGCAACCGAACACGTATCCGGGTAACACTGTTGTGCACTACGCCGCGGATGCCTCCTATCCGGGCCATTCTGTTCAACCGGTTCCGGTTTATTATTTTCCCGGTCAGGTTCAGCCAGGAACTCTTCCAGTTCATATGCAGGCTCCGTATCCATACGTTCAGCAACCATATCATGCAGTGGTTCCAGGTCAGGTACCGGTTTCGTACCATCAGTTGGTTCCGGGTTCGGGTCAAATATATGGCACAGGTTTGAGGCATGTAAGCCCGGTGAATCATGCATATAGTACATCTGCCACGGCAGCTATGGTTCAAGACGGTATGAAGCAGCAGTTGTATCAGGCGGTGCCAGGTTCCGGTTACCCAGCAATGGCAATGACAATGACGGGCGGGGATGAACCGCAGATGGGAGGTTCGGAGTTTGTGGCGGGTCGGGTCACCAACTCTCTGAATGAATGA 1287 0.5711 MTSHPLHPSCDFDTDSVASSPRSDQFHDNPHPQRVRFMCSFGGKILPRPHDNQLRYVGGDTRIVAVNRSISFPAFLLKLSKLSGMTNITAKYQLPNEDLDALISVTTDEDVENMMDEYDRIAHNLNPRSARLRLFLFPESSAADDTSLAGSIGSLLNGSVKRESWFLDALNGGVSALERGRSEASSMVSEVPDYLFGLDNSEETPSNRELRHKDRTGLYSDPGSPAPVASQFSSTSSVPCVPSIPNLPPVKTKLANPAPEVESKEIQIEAEPGPPPQPQPNTYPGNTVVHYAADASYPGHSVQPVPVYYFPGQVQPGTLPVHMQAPYPYVQQPYHAVVPGQVPVSYHQLVPGSGQIYGTGLRHVSPVNHAYSTSATAAMVQDGMKQQLYQAVPGSGYPAMAMTMTGGDEPQMGGSEFVAGRVTNSLNE 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30392g00003 428 PANTHER OS05G0427100 PROTEIN-RELATED 14 361 - -
Stsc30392g00003 428 Pfam PB1 domain 50 138 IPR000270 GO:0005515
Stsc30392g00003 428 CDD PB1_UP2 38 137 - -
Stsc30392g00003 428 Gene3D - 55 138 - -
Stsc30392g00003 428 MobiDBLite consensus disorder prediction 1 26 - -
Stsc30392g00003 428 MobiDBLite consensus disorder prediction 197 235 - -
Stsc30392g00003 428 MobiDBLite consensus disorder prediction 1 31 - -
Stsc30392g00003 428 MobiDBLite consensus disorder prediction 204 218 - -
Stsc30392g00003 428 MobiDBLite consensus disorder prediction 254 283 - -
Stsc30392g00003 428 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 54 139 - -
Stsc30392g00003 428 SUPERFAMILY CAD & PB1 domains 50 142 - -
Stsc30392g00003 428 SMART PB1_new 49 139 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30392g00003 Stsc-Chr30392 19462 21250 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30392g00003 22 178 MAP Kinase Kinase Kinase AT3G46920 43.038 2.69e-32 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30392g00003 - - gmx:100806717 532.717