Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30392g00002 ATGGGGAAAAAATCAGCTGCGGCCACCGGGGAGGAGGAGGATGTTCTGCCGGACCACCTGAGGTGCGGGAGGACGGACGGACGGCAATGGCGGTGCCGGCGGAGAGTGAAGGATAATCTGAAGCTGTGCGAGATTCACTACCTTCAAGGTCGCAAACGCCAGTCCAAGGAGAAGGTCCCTGAGTTCCTCAAGCTTCAGAGGAAGAAGCGCACGAGCCACTCTCCTTCTCCTCCTTCCTCTCCTGCCAACAATGTCGAAATTAGGGCACGCAAGGACTCCAAGATTGCCCTTCTCGCCAACAAGAAGCGCAAGCTTTCCGATGGTACTTCAGAGGCATTGGTCGTTCAGAAGAAGAATAAGAACAAGAAGAAGAAAAGCAAGAACAAGGTGTCTAGGAAATGCGGCGATGATAATCATTTGGAGCTTATAAGGATGGTTTTAAAGAGAGAGGTTGAGAAAAGGAAGAAGAGGAACAATAAGAATGATGATGATGAAGAAGATGAAGAATGCAGCGAAGGCGGAGAGTTGAGGAGAGAATTGCCTAATGGAGTGATGGCTATCTCTGCAGCTCCAACCGCCAGTGGTTACAATGGCAATGTGGGTTCCCATTTTGATGTAAAAGTGGGTGCTGATTCTAATTCCAAATCGCCAGCCGTCACGCCGCGTTACTTCAGGTCCAAGAATGTTGATAGAGTCCCTGTTGGCAGGTTGCAGGTTGTGCCTTATGGACAGGGTTTGAAGAAGAAGGGAAAGGGTAAGAAGAGGTGTCATTGGTGCCACAAGAGTAATTCTCAGAATCTTATCAAGTGTTCTAACTGTAACAAGGAGTTCTTCTGCGTGCATTGCATAAAACAGCGGTATTTTGACACTATCAATGAAGTTAAGAAGGCATGCCCTGTATGTAGAGGAACTTGCACTTGTAAAGACTGTTTGGCAAGTCAATATAAAGACAGTGAAAGTAAGGAACATTTGGCTGGTAAAAGCAGAGTTGGTAGAATATTGCATTTACATTACCTAATCTGTATGCTCCTTCCAGTACTGAAACAAATAAGTGAATATCAGGATACTCAGCTAGAAACTGAAGCAAGACTTAAAGGTAAAGCTTCTGATATTCACATCAGGCAGGCTGAATTCGGCTTCAATGAGAAAAATTACTGCAATCACTGCAAAACTCCCATTTTGGATCTCCATAGAAGCTGCCCTAGTTGCTTGCATAACCTTTGCTTAAATTGTTTTCAAGAATTAAGTCAGGGAAGCATTTCTGGAGAATCAATGTTGAAGCTACCGATTAAAACAAAAACTTGTGTTGCCTGTGAGAAACAAAATTCAGATGCGAAGGTCATTTCTAGCTGCAATGTACCTCATTGTAATGGCATTGAGAGTGTAACATGTCCATCTACAGAACTTGGTGGTTGTGGTAAAAGCCACCGTGATTTGAGAAATGTTTTTCCCTCAAGTTTGATCAAAGAGATGGAACTAAAGGCAGAAGAAATCATGTGCAGTTATGAACTCCCTGAAACACCAGACAAAAGTTCAAAATGCTCATTTTGTTCTGACACAGATCACAAAACTAAAAAACATAAGCAGTTGCAAGAAGCAGCTCTAAGAGAGGATTCAAATGATAATTGCTTGTTTAACCCCACAGTTTCGGACATCAATGGTGATAATTTTGAACACTTTCAAAAACACTGGGGAAAAGGCCATCCTGTAGTGGTGCAAGATGTTCTTCAAAATACATCAAACCTCAGCTGGGATCCACTGATCATGTTCTGTAGTTATCTTGAGCGGAGCATTACAAGATACGAGAGTAATAGGGAGTTTCTTGAATCTTGTTTGGATTGGTGTGAGGTGGAAATTAACATCAGGCAGTCTTTCACCGGGTCTCTCAAATGTGGTCCTCGGGAAAACACTTGCCATGAGATGCTGAAATTAAAGGGGTTGTTGTCTTCCCAACTTTTCAAAGAGCAGTTTCCAGCTCATTTTTCTGAAGTAATTAATGCTCTACCAGTTCAAAAATACATGAATCCTATGTCTGGTCTTCTGAATTTGGCTGCAAGTTTGCCACTTCAGAGTACTAACCATGACATTGGGCCGTATGTACATATTTCATATGGCTGTGCCGACAGGGAAGCTGATTCTGTTAATATTATGGCACATACCACGGATGTTCCCCTCTCTACAGAGCAGCTTTCAAAAATTCGACGACTACTGAAAAAGCATAAAGCTTTATGTCAAAGGGATTCTTCTAAAATTACTTCTGAACAACACCAGGAAGAAAAAGTAAAAGGAACGTTAACACCACATGCTGAAGAAGTGGAACAAAAAGGTTTGCAGAGAGTGGTCAAAGAAGAAGTTGACTTTTTAAGGAGAGTCAATAGAACAGCTTACATCTCAACTCTCTCTGAAAATGCAGTTAGTGAAAGTATAGAGAACAGTTTTTCACAGAATAGAGAATGTGATTTATCTGATTCTGATTCAGAAGCCACAGTTCTCGATGGGTTTTTTACAGGCCGTAATCCGAGAAATCTGTTTGAAAGCTCCAAGGATAAAAATCAGTTTTTCGCCGAGCAGTCTGGGGCCCAATGGGATGTATTTCGCAAACAAGATGTTCCAAAGCTCATGGAATACCTTATAAGACACTGCGATGAGTTTTCTCATAACTATGACAATAATAAGGAGATGGTTCATCCAATTCTAGATCAGTGCATTTTTCTTGACAAAAATCACAAAACCAGGCTTAAGGAAGAGTTTCAGGTTGAACCATGGACATTCAATCAACATGCTGGAGAAGCTGTTGTCATTCCCGCTGGATGTCCATACCAGATAAAAAATCCTAAGTGTTGCGTTCATGTGGTGTTGGAATTTGTGTCACCGGAGAATGTTTCCGAGTGTATCCAGCTGATTGACGAGGTCCGACTTCTGCCAGCAGGCCATAAAGCCAAAGTAGAGAAGTTGCAGGTGAAGAAAATGGTGCTTCACAGCATGAATGCTGCAATTAAGGAAATACATGAGCTTACAAACAAGCAAACCAAAACATGA 3039 0.4215 MGKKSAAATGEEEDVLPDHLRCGRTDGRQWRCRRRVKDNLKLCEIHYLQGRKRQSKEKVPEFLKLQRKKRTSHSPSPPSSPANNVEIRARKDSKIALLANKKRKLSDGTSEALVVQKKNKNKKKKSKNKVSRKCGDDNHLELIRMVLKREVEKRKKRNNKNDDDEEDEECSEGGELRRELPNGVMAISAAPTASGYNGNVGSHFDVKVGADSNSKSPAVTPRYFRSKNVDRVPVGRLQVVPYGQGLKKKGKGKKRCHWCHKSNSQNLIKCSNCNKEFFCVHCIKQRYFDTINEVKKACPVCRGTCTCKDCLASQYKDSESKEHLAGKSRVGRILHLHYLICMLLPVLKQISEYQDTQLETEARLKGKASDIHIRQAEFGFNEKNYCNHCKTPILDLHRSCPSCLHNLCLNCFQELSQGSISGESMLKLPIKTKTCVACEKQNSDAKVISSCNVPHCNGIESVTCPSTELGGCGKSHRDLRNVFPSSLIKEMELKAEEIMCSYELPETPDKSSKCSFCSDTDHKTKKHKQLQEAALREDSNDNCLFNPTVSDINGDNFEHFQKHWGKGHPVVVQDVLQNTSNLSWDPLIMFCSYLERSITRYESNREFLESCLDWCEVEINIRQSFTGSLKCGPRENTCHEMLKLKGLLSSQLFKEQFPAHFSEVINALPVQKYMNPMSGLLNLAASLPLQSTNHDIGPYVHISYGCADREADSVNIMAHTTDVPLSTEQLSKIRRLLKKHKALCQRDSSKITSEQHQEEKVKGTLTPHAEEVEQKGLQRVVKEEVDFLRRVNRTAYISTLSENAVSESIENSFSQNRECDLSDSDSEATVLDGFFTGRNPRNLFESSKDKNQFFAEQSGAQWDVFRKQDVPKLMEYLIRHCDEFSHNYDNNKEMVHPILDQCIFLDKNHKTRLKEEFQVEPWTFNQHAGEAVVIPAGCPYQIKNPKCCVHVVLEFVSPENVSECIQLIDEVRLLPAGHKAKVEKLQVKKMVLHSMNAAIKEIHELTNKQTKT 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30392g00002 1012 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 18 1010 IPR045109 GO:0032454|GO:0033169
Stsc30392g00002 1012 Gene3D Cupin 546 981 - -
Stsc30392g00002 1012 ProSiteProfiles WRC domain profile. 16 60 IPR014977 -
Stsc30392g00002 1012 MobiDBLite consensus disorder prediction 49 68 - -
Stsc30392g00002 1012 ProSiteProfiles Zinc finger RING-type profile. 256 302 IPR001841 -
Stsc30392g00002 1012 MobiDBLite consensus disorder prediction 49 89 - -
Stsc30392g00002 1012 Pfam WRC 17 58 IPR014977 -
Stsc30392g00002 1012 SUPERFAMILY Clavaminate synthase-like 555 995 - -
Stsc30392g00002 1012 MobiDBLite consensus disorder prediction 1 26 - -
Stsc30392g00002 1012 ProSiteProfiles JmjC domain profile. 657 972 IPR003347 -
Stsc30392g00002 1012 MobiDBLite consensus disorder prediction 153 177 - -
Stsc30392g00002 1012 Pfam JmjC domain, hydroxylase 859 953 IPR003347 -
Stsc30392g00002 1012 SMART cupin_9 657 972 IPR003347 -
Stsc30392g00002 1012 MobiDBLite consensus disorder prediction 101 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30392g00002 Stsc-Chr30392 8437 13405 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc30392g00002 JmjC 3.2e-08 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30392g00002 K15601 - gmx:100787798 1200.65