Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30390g00007 ATGTCTGGTGACGAAGGTCCTGTTGTGGCAGCTGAGCAAGCAGCTCCTGCCATTGGTGAGCCAATGGATATCATGACTGCCTTACAACTTACACTCAGGAAGTCACTTGCTTATGGTGGTCTGGCACGAGGCCTTAATGAGGGTGCAAAGGTGATTGAGAAACGCACTGCTCAACTCGTTGTTCTTGCTGAGGATTGTGACCAACCTGACTATGTTAAACTTGTCAAGGCCCTTCGTGCCGAGCACAATGTAAGCTTACTGACAGTTCCAAGCGCGAAGACCCTTGGAGAATGGTCCGGGTTGTGCAAGATTGACTCGGAAGGAAAAGCTAGGAAGGTGACTGGTTGCTCCTGTGTAGTTGTCAAGGATTTTGGAGAAGAACATGAAGCCTATAATGTTGTCCTTCAGCATGTCAAAGCTCAATGA 426 0.4836 MSGDEGPVVAAEQAAPAIGEPMDIMTALQLTLRKSLAYGGLARGLNEGAKVIEKRTAQLVVLAEDCDQPDYVKLVKALRAEHNVSLLTVPSAKTLGEWSGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAQ 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30390g00007 141 ProSitePatterns Ribosomal protein S12e signature. 27 45 IPR000530 GO:0003735|GO:0005840|GO:0006412
Stsc30390g00007 141 PANTHER 40S RIBOSOMAL PROTEIN S12 15 140 - -
Stsc30390g00007 141 SUPERFAMILY L30e-like 21 139 IPR029064 -
Stsc30390g00007 141 FunFam 40S ribosomal protein S12 8 141 - -
Stsc30390g00007 141 Gene3D - 9 141 IPR029064 -
Stsc30390g00007 141 PRINTS Ribosomal protein S12E family signature 86 107 IPR000530 GO:0003735|GO:0005840|GO:0006412
Stsc30390g00007 141 PRINTS Ribosomal protein S12E family signature 45 61 IPR000530 GO:0003735|GO:0005840|GO:0006412
Stsc30390g00007 141 PRINTS Ribosomal protein S12E family signature 31 44 IPR000530 GO:0003735|GO:0005840|GO:0006412
Stsc30390g00007 141 PRINTS Ribosomal protein S12E family signature 111 124 IPR000530 GO:0003735|GO:0005840|GO:0006412
Stsc30390g00007 141 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 27 120 IPR004038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30390g00007 Stsc-Chr30390 48203 49645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30390g00007 18 141 Cytoplasmic Ribosomal Protein Gene Family AT1G15930 75.000 1.08e-64 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30390g00007 K02951 - gmx:100786733 240.736