Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30387g00003 ATGAAAGTCCCATCAATTTCATCATCATCATCATCCTTCTCCTTTATTCTCTTCCTCTTATTGCTCATTGTACCATTACTACAAGCCCAACAACAAGCTCCATCAACAAACTTCCCTCCTCCTCCTCCTTTGTCTCCGCCTTCTTCAACTCGAAAATATTCACCTTCTCCACCTCCGCCTCCACCTTTTTCTTCATCTCACAAAGATGCTCCTCCTCCACCACCATCCCCCGCTCAAAAATATGCTCCTCCTCCACCACCTTTTTCTTTTCCTCCTCCGTCTCCTTCTCTTCCAACGCTTACCCCTCCTTCACCACCTTCTCCGCTTTCTCCTCCTCCTCATTCCTCCTTTGAAGCCTGCAAGTCCACCCTGTACCCTAAACTCTGTCGCTCCATTCTAAAATCCATTCGCTCCTCGCCATCCGATCCATACCACTTAGGCAAATTCTCCATCAAACAAAGCCTCAAACAAGCCAAGAAGCTCGCCAAGGCCTTCAACGACTTCCTCCAAAAACACAAGTCTTCTTCCTACCTCAACCAAGCCGAGATCTCGGCACTCGAAGACTGCCGAGACCTCAACAAACTCAACGTAGACTACCTCCAAACCCTCTCCGACAACCTCAAATCCGCGACCTCATCCAATGACAATGATGAATTGGTTGAGGACACCGAGACATATCTGAGTGCCGTGGCTACTAACCACTACACTTGCTATGATGGGTTGGTGGCGGCGAAGAGTAACATTGCGAACGCGCTGGCTGTGCCTCTCAACGATGTGAAGCAACTGTATAGTGTGGCGCTTGGGTTGGTTACTGAGGCTCTGAACAAGAACATGAAGAAGCATAAGACAAGAAAGCATGGTCTTCCTTCTAATAGCTACAAAATTAGACAGCCTCTTCAGAAGATCATTAAGTTTCTCAAGAAAACAAATAGTGGTTGCAAAGATTCATCATTGAATTGTACAAGGAAAAGCGAAAGGATTCTTGAAGAAAGCAATAATGGGAAAGGAATTCTACTGAACAGCTATGTGATAGTGAGCCTTGATGGAACAGAGAACTTCACTTCAATCGGAGACGCCATTGCTATTGCTCCGAACAATTCAAAGGCAGAAGATGGCTATTTCCTTATCTATGTCACAGAAGGGATCTACGCGGAGTATGTCACTATCCCCAAACAAAAGACCAACATTTTGCTTGTTGGAGATGGTATCAATAACACTATCATCACAGGGAATCATAGTGTCATAGATGGTTGGACTACTTTCAATTCTTCAACTTTTGCTGTTTCCGGAACAAGATTCATGGCAGTGGATATTACCTTCAGAAACACAGCTGGTCCTGAAAAGCACCAAGCAGTAGCAGTTAGAAGCAATGCTGATCTCTCCACCTTCTACCGATGCAGTTTCGAAGGATATCAAGACACACTCTACGTCCATTCTCTCAGACAATTCTACAAAGAATGTGATATATACGGAACAGTTGACTTCATATTCGGTAATGCCGCCGTAGTTTTCCAGAGCTGCAACATCTACGCAAGAAAGCCAATGGCCAACCAGAACAACGCCATCACGGCGCAAGGCCGGACGGATCCGAACCAAAACACCGGAATCTCGATCCAGAATTGCACCATCCAGGCCGCCCCCGACTTGGAGGCGGACTTGGAATCGACGCAGAATTACTTGGGTAGGCCATGGAAAGAGTATTCGAGGACGGTTTATATGCAGTCGTATATCGGTGACTTGATTAACCCTTTTGGATGGTTGGAGTGGAATGGGACTGTTGGGTTGGATACACTGTTCTATGGTGAGTTTAAAAACCATGGTCCTGGAGCTGGTACAAGCAACAGAGTTAAATGGAAAGGGTATAATTTGTTGAATGCTACTCAAGCTTGGAATTTCACTGTTTTGAATTTTACCTTGGGGGATACTTGGCTTCCTGACACGGATATACCATACACTCTAGGCCTAGAAGATGATTATTAG 1980 0.4551 MKVPSISSSSSSFSFILFLLLLIVPLLQAQQQAPSTNFPPPPPLSPPSSTRKYSPSPPPPPPFSSSHKDAPPPPPSPAQKYAPPPPPFSFPPPSPSLPTLTPPSPPSPLSPPPHSSFEACKSTLYPKLCRSILKSIRSSPSDPYHLGKFSIKQSLKQAKKLAKAFNDFLQKHKSSSYLNQAEISALEDCRDLNKLNVDYLQTLSDNLKSATSSNDNDELVEDTETYLSAVATNHYTCYDGLVAAKSNIANALAVPLNDVKQLYSVALGLVTEALNKNMKKHKTRKHGLPSNSYKIRQPLQKIIKFLKKTNSGCKDSSLNCTRKSERILEESNNGKGILLNSYVIVSLDGTENFTSIGDAIAIAPNNSKAEDGYFLIYVTEGIYAEYVTIPKQKTNILLVGDGINNTIITGNHSVIDGWTTFNSSTFAVSGTRFMAVDITFRNTAGPEKHQAVAVRSNADLSTFYRCSFEGYQDTLYVHSLRQFYKECDIYGTVDFIFGNAAVVFQSCNIYARKPMANQNNAITAQGRTDPNQNTGISIQNCTIQAAPDLEADLESTQNYLGRPWKEYSRTVYMQSYIGDLINPFGWLEWNGTVGLDTLFYGEFKNHGPGAGTSNRVKWKGYNLLNATQAWNFTVLNFTLGDTWLPDTDIPYTLGLEDDY 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30387g00003 659 NCBIfam pectinesterase inhibitor domain 118 271 IPR006501 GO:0004857
Stsc30387g00003 659 PANTHER PECTINESTERASE 118 645 - -
Stsc30387g00003 659 Pfam Plant invertase/pectin methylesterase inhibitor 119 268 IPR006501 GO:0004857
Stsc30387g00003 659 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 119 271 IPR035513 -
Stsc30387g00003 659 Pfam Pectinesterase 343 640 IPR000070 GO:0030599|GO:0042545
Stsc30387g00003 659 ProSitePatterns Pectinesterase signature 2. 489 498 IPR033131 -
Stsc30387g00003 659 FunFam Pectinesterase 338 655 - -
Stsc30387g00003 659 Gene3D Invertase/pectin methylesterase inhibitor family protein 118 273 IPR035513 -
Stsc30387g00003 659 SMART PMEI_2 112 269 IPR006501 GO:0004857
Stsc30387g00003 659 CDD PMEI-like_3 119 272 - -
Stsc30387g00003 659 Gene3D - 340 657 IPR012334 -
Stsc30387g00003 659 SUPERFAMILY Pectin lyase-like 340 654 IPR011050 -
Stsc30387g00003 659 MobiDBLite consensus disorder prediction 32 116 - -
Stsc30387g00003 659 MobiDBLite consensus disorder prediction 35 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30387g00003 Stsc-Chr30387 34704 40300 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30387g00003 76 655 Carbohydrate Esterase AT3G10720 57.601 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30387g00003 K01051 - gmx:100776781 849.351