LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc30386g00010	ATGGCGAACACGAAAAACGTCCTTCGGTTCATCATCATTTTTCAATATATACCAAGGCTGTTCCTGATTTTTCCACTTTCATCCCAAATTGTAAAGGCTACAGGGGTTGTGACAGAGACAGCATGGGCTGGTGCTGCTTATAATCTCATGCTTTACATGCTAGCTAGCCATTTTTTTGGAGCTTGCTGGTACCTTCTATCAATTGAGAGACAAGAAGCATGCTGGAGGAGAGTCTGTGATGAGAAAAATTCACATTGTGAACATAGTTTCTTTGACTGCAACATTGTTAAAGATCCAGATAGGAAGGCATGGTTTCAAGGAAGTAATATCACAAAGTTATGTTCTCCAGATGCTAACTTTTATCCCTTTGGCATATATGGTGATGCAGTCACATCAAAAGTTACAACCTCACCATTCTTTAAGAAGTACTTCTATTGTCTTTGGTGGGGTCTCAGGAATTTGAGTTCTTTGGGGCAAAGCCTAATCACAAGCACTTTTATTGGAGAAATAATGTTTGCCATTCTGGTTGCAACCTTTGGATTGGTTCTTTTTGCATTACTCATTGGTAATATGCAGACATTCCTTCAATCAACAACTGTGAGGTTAGAAGAGTGGAGGGTCAAAAGAACTGATACAGAACAATGGATGCATCACAGACAGCTTCCTCAAGAACTAAGGCAGTCCATCCGAAAATATGATCAATATAAATGGCTGGCGACTCGAGGAGTAGATGAAGAAGCCCTTCTCAAAGATCTTCCGTTGGATCTTCGAAGAGATATCAAGCGCCACCTTTGTATCGAGCTAGTTCGACGAGTTCCATTGTTTGATCAAATGGATGAGAGGATGCTAGATGCAATATGTGAAAGGCTAAAGCCTGCATTGTGCACAGAGAGCACATATCTTGTCCGCGAGGGCGATCCGGTGAACGAGATGCTCTTCATAATCAGAGGAAATCTTGATTCCTACACAACCAATGGTGGCCGGACCGGATTCTTCAACTCGTGCCGGATCGGCCCCGGCGATTTCTGCGGCGAAGAACTCCTAACATGGGCCTTAGATCCAAAACCAAGTGTGATAATACTTCCTTGTTCCACAAGAACAGTTAAGGCCATATCAGAAGTAGAAGCATTTGCACTCATGGCAGAGGATTTGAAATTTGTTGCATCACAATTTAGAAGATTGCATAGCAAGCAACTTAGGCACAAGTTCAGGTTTCACTCACACCAATGGAGAACTTGGGCTGCATGCTTCATACAAGCTGCATGGAGAAGGTTCAAGAAGAGAAAAGAAGCTGCTGAATTGAGGGCAAGAGAGGAAGAAAATGAGGCTGAAACACATGCTGCTACAATGGTGACAAGGAGCAATAGGAAGGGTATGAATGTAAATTCAGTTGCAGATTCTGAAGAAGTAAGCTCTTTGCAGAAGCCAGATGAACCAGACTTTTCTGTTGATGAATGA	1458	0.4246	MANTKNVLRFIIIFQYIPRLFLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHFFGACWYLLSIERQEACWRRVCDEKNSHCEHSFFDCNIVKDPDRKAWFQGSNITKLCSPDANFYPFGIYGDAVTSKVTTSPFFKKYFYCLWWGLRNLSSLGQSLITSTFIGEIMFAILVATFGLVLFALLIGNMQTFLQSTTVRLEEWRVKRTDTEQWMHHRQLPQELRQSIRKYDQYKWLATRGVDEEALLKDLPLDLRRDIKRHLCIELVRRVPLFDQMDERMLDAICERLKPALCTESTYLVREGDPVNEMLFIIRGNLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPKPSVIILPCSTRTVKAISEVEAFALMAEDLKFVASQFRRLHSKQLRHKFRFHSHQWRTWAACFIQAAWRRFKKRKEAAELRAREEENEAETHAATMVTRSNRKGMNVNSVADSEEVSSLQKPDEPDFSVDE	485

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc30386g00010	485	Coils	Coil	422	449	-	-
	Stsc30386g00010	485	MobiDBLite	consensus disorder prediction	436	485	-	-
	Stsc30386g00010	485	SUPERFAMILY	Voltage-gated potassium channels	10	196	-	-
	Stsc30386g00010	485	MobiDBLite	consensus disorder prediction	471	485	-	-
	Stsc30386g00010	485	FunFam	Cyclic nucleotide-gated ion channel 1	201	265	-	-
	Stsc30386g00010	485	MobiDBLite	consensus disorder prediction	447	470	-	-
	Stsc30386g00010	485	CDD	CAP_ED	274	406	IPR000595	-
	Stsc30386g00010	485	Gene3D	Helix hairpin bin	201	265	-	-
	Stsc30386g00010	485	Pfam	Ion transport protein	14	201	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Stsc30386g00010	485	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	3	481	-	-
	Stsc30386g00010	485	ProSiteProfiles	cAMP/cGMP binding motif profile.	274	360	IPR000595	-
	Stsc30386g00010	485	FunFam	Cyclic nucleotide-gated ion channel 1	272	391	-	-
	Stsc30386g00010	485	Gene3D	-	2	198	-	-
	Stsc30386g00010	485	SMART	cnmp_10	274	406	IPR000595	-
	Stsc30386g00010	485	SUPERFAMILY	cAMP-binding domain-like	204	401	IPR018490	-
	Stsc30386g00010	485	Gene3D	Jelly Rolls	272	393	IPR014710	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc30386g00010	Stsc-Chr30386	78644	80973	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc30386g00010	1	484	Ion Channels	AT2G28260	77.479	0.0	778

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc30386g00010	K05391		-	dcr:108219416	761.911