Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30386g00006 ATGAAGCTCAAGCTCGGAGTTGCTCTTGCTATCGTCTTCGGCTTGCTCTCGATTCCGCACTCGTCTTGTGATGAACCTTCTGATTCCTATGGCCTAAACAAGTGGAAATGCAAATGTTCTTTCGAAGGGAACCAGAGCTACTCTATTGCAAATTGTTCCAAGTCATGTGACTGCCATTTGGATGCTGGAGAGACTTCATCCATCTGGACATGCTTATGTAATCCCAATGGATTCCCCCAAATGGGAGTAGCATCAGCAAATGGCCACAACCATAATTGCTTCAGTGCCTGCAACTGTAGCTGGGGAAGTAACAGCTTGTCACTAGGTTCGAAGAAACACATCTCCAGCAAGACTGTTGTAGCTATTCTACTAATATGTGTTGTGTGTACGACCATCGCGTTTCTTACATCGGTCCTATGCTATGTCTACCGAAGGGACAGATGTCCTATTCAATCGCCGATATTCTCACCGGATAAGGAAACATGTAGCGGTAGTGGTAGCACTGCCAACTTAATTAGTCACAGGACAGTGACTTCTTCAGTGACAGAAACAAAATTTGTTCTTGATTCTCCTGTTAGTAATATGACAGGATGCTTTCAGAAAGCCTCTTTCTTGTTTGGGATCCAGAGAGAAACTTTTCATGGGAATATTATTCAATTTTCCTTTGCCGAACTAGAAAATGCCACCGAAAACTTTTTAGGTTCCAACCTAATTGGACTAGGTGGAAGTAGTTATGTATACCGTGGTCGTCTGAAAGATGGTAGTATCATTGCAGTTAAGCGACTAAAAGATCCAGGAGGGCCAGAAGCAGACTCTGCATTTTTCAAAGAGATTGAACTATTATCTAGACTTCATCATTGCCATTTGGTGCCTTTGCTTGGATACTGCTCAGAATTAAAAGGGAAACATTTTCAGAGGCTACTAGTATTCGAGTACATGTCTAATGGGAATTTGAGGGACTGGTTAGATGGAGTGTCTGCGAAAAATCTCGATTGGAACACACGTGTCACAATCGCAATAGGAGCTGCAAGAGGCTTGGAATATCTCCATGAAGCGGCTGCTCCGAAAATTCTTCATAGAGATGTCAAATCAACAAACATTCTTCTTGATGAAAATTGCCAAGCAAAGATAACTGACCTTGGTATGGCTAAGAATGTGAGAGCGGATGATCACCCGAGCTGTTCGAATTCTCCAGCCAGAATGCAGGGAACATTTGGCTATTTTGCACCCGAGTATGCCATTGTTGGGCGAGCCTCTCTTGAATCGGATGTTTTCAGTTTCGGGGTGGTTCTTCTCGAGCTTATTAGTGGTCGGCAACCAATCTATAAATCTTCGGGCAAAGAAGAAAGCCTTGTTATATGGGCTGCGCCTCGCTTACAGGATAGTAGGCGAGTAATATCGGAGTTAGTCGATCCACGGTTGGAAGGATACTTCCCGGAAGAAGAGGTGCAGATTATGGCATACTTAGCAAAGGAGTGTTTGTTGCTGGATCCGGAAACTCGTCCATCCATGAGCGAGGTTGTTCAAATTCTCAACAGTATCTCCCCGGACAAATCGCGACGGAGACGAAACATTCCAGCTAGCCTGTTCCTGGAACCAGTGGAAGCCGAAAAGCATATGCAAGTTTCACCTAATGAATCTCCAGCTAATAGTTCATTGCAACAAGAAACTGATCAAAGATTCTGGATTGGGAACAAAAACAAAGAAGCTAATGCAGTTTCAGAAGAGGAGATAGTAGACCTAACCGAGCCGCGGTTCGAATCGTTCTGCATGACAAATGTCAATTTCTCCTGA 1794 0.4392 MKLKLGVALAIVFGLLSIPHSSCDEPSDSYGLNKWKCKCSFEGNQSYSIANCSKSCDCHLDAGETSSIWTCLCNPNGFPQMGVASANGHNHNCFSACNCSWGSNSLSLGSKKHISSKTVVAILLICVVCTTIAFLTSVLCYVYRRDRCPIQSPIFSPDKETCSGSGSTANLISHRTVTSSVTETKFVLDSPVSNMTGCFQKASFLFGIQRETFHGNIIQFSFAELENATENFLGSNLIGLGGSSYVYRGRLKDGSIIAVKRLKDPGGPEADSAFFKEIELLSRLHHCHLVPLLGYCSELKGKHFQRLLVFEYMSNGNLRDWLDGVSAKNLDWNTRVTIAIGAARGLEYLHEAAAPKILHRDVKSTNILLDENCQAKITDLGMAKNVRADDHPSCSNSPARMQGTFGYFAPEYAIVGRASLESDVFSFGVVLLELISGRQPIYKSSGKEESLVIWAAPRLQDSRRVISELVDPRLEGYFPEEEVQIMAYLAKECLLLDPETRPSMSEVVQILNSISPDKSRRRRNIPASLFLEPVEAEKHMQVSPNESPANSSLQQETDQRFWIGNKNKEANAVSEEEIVDLTEPRFESFCMTNVNFS 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30386g00006 597 ProSitePatterns Protein kinases ATP-binding region signature. 238 260 IPR017441 GO:0005524
Stsc30386g00006 597 FunFam receptor-like serine/threonine-protein kinase NCRK 313 523 - -
Stsc30386g00006 597 Pfam Protein kinase domain 236 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30386g00006 597 PANTHER OS01G0750732 PROTEIN 32 533 - -
Stsc30386g00006 597 CDD STKc_IRAK 238 514 - -
Stsc30386g00006 597 FunFam receptor-like serine/threonine-protein kinase NCRK 206 312 - -
Stsc30386g00006 597 Gene3D Phosphorylase Kinase; domain 1 207 312 - -
Stsc30386g00006 597 ProSiteProfiles Protein kinase domain profile. 232 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30386g00006 597 Gene3D Transferase(Phosphotransferase) domain 1 313 529 - -
Stsc30386g00006 597 SMART serkin_6 232 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30386g00006 597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 357 369 IPR008271 GO:0004672|GO:0006468
Stsc30386g00006 597 SUPERFAMILY Protein kinase-like (PK-like) 213 511 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30386g00006 Stsc-Chr30386 62043 65485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30386g00006 1 594 Receptor kinase-like Gene Family AT2G28250 53.088 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Stsc30386g00006 Pkinase 3.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30386g00006 - - gmx:100817870 900.968