Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30386g00001 ATGCAAGATGAGGTTACAAGGAGATACAAGCAATACCATCAACAAATGCAAATGGTTGTTTCATCCTTTGAGTCAGTGGCAGGCCTCAATTCTGCCACCCCTTACGCTTCCTTGGCGCTCAAGTTAGTTTCAAAGAACTTCAAGTCCCTAAACAACTCCATCTCCGATCAGCTTAAGCTTTTATGCCAAGCCATGGGAGAGGATTCCACAATCCCACTCACCGCCAATGCTAGTAACCAATTCGAGTCGAACGCGGCGAGGTTAAGGTGTATGGATCAAACCTTACATAGGAACAAACCCGGTGGTGGTGGTGGTGGGGGTAATATGGACTTTGAACCCCAACAACATGTATGGAGGCCGCAGCGTGGCTTACCGGAGCGCGCGGTGGCAATCCTTAAAGCATGGTTGTTTGAGCATTTTCTTCATCCGTACCCTACGGATACTGATAAACACATGCTAGCTACTCAAACTGGTCTATCAAGAAATCAGGTATCAAATTGGTTCATAAATGCTAGAGTCCGGGTATGGAAACCAATGGTTGAGGAAATTCACATGCTTGAAACAAAAGGTGCCAATCAAATTTCTAGTAATAGAATGGGTGAGGGAACTTCAGCCACCATTAATGATGGAAGCAACCATGCCAAAGTATTAGTTGATCAACCTCTCAACAAGTTCGCCGGCGCGTGCGCGCCGGCAGCGAACCCTATCTCGGGAAGGCAATTTCAGTGTTTGCAAATGGGATCATCATCATCCTTGTTGGCCAATGCCAATGCCAATGCGGAAAATGATGACCTACAACAACATGAAGAGGTACAATGGAGTCAAGAAAAGAGGTCTAAATTGGAATCCATGGATGGGACATTGATCGGTTTGATGCCGTACCGCCGAACCGGCGGTGTCGGTGGCGAGTTTGGGGGACTTGGACCTGTGTCACTAACCTTGGAACTAAGGCATGGAGTTGAAGGTTCACAACAACAAATACAAGGTCATGAGGAGCAACTTAGGCACCATTTTGGAGGGATGATTTCTTAG 1032 0.468 MQDEVTRRYKQYHQQMQMVVSSFESVAGLNSATPYASLALKLVSKNFKSLNNSISDQLKLLCQAMGEDSTIPLTANASNQFESNAARLRCMDQTLHRNKPGGGGGGGNMDFEPQQHVWRPQRGLPERAVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGANQISSNRMGEGTSATINDGSNHAKVLVDQPLNKFAGACAPAANPISGRQFQCLQMGSSSSLLANANANAENDDLQQHEEVQWSQEKRSKLESMDGTLIGLMPYRRTGGVGGEFGGLGPVSLTLELRHGVEGSQQQIQGHEEQLRHHFGGMIS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30386g00001 343 SMART prehox3 1 56 IPR006563 -
Stsc30386g00001 343 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 199 - -
Stsc30386g00001 343 SMART HOX_1 118 182 IPR001356 GO:0003677
Stsc30386g00001 343 Pfam Associated with HOX 1 55 IPR006563 -
Stsc30386g00001 343 Gene3D - 121 183 - -
Stsc30386g00001 343 FunFam BEL1-like homeodomain protein 9 121 183 - -
Stsc30386g00001 343 Pfam Homeobox KN domain 135 174 IPR008422 GO:0003677|GO:0006355
Stsc30386g00001 343 CDD homeodomain 118 179 IPR001356 GO:0003677
Stsc30386g00001 343 SUPERFAMILY Homeodomain-like 120 184 IPR009057 -
Stsc30386g00001 343 ProSiteProfiles 'Homeobox' domain profile. 115 178 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30386g00001 Stsc-Chr30386 10011 14061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30386g00001 1 188 Homeobox Transcription Factor Family AT5G02030 58.639 8.72e-64 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Stsc30386g00001 POX 1.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30386g00001 - - aip:107629241 486.493