Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30384g00008 ATGGGGCGTGTAAAATTGGAGATAAAAAGAATAGAAAACAATCCAAATCGACAAGTTACATTCTCAAAACGTCGAAATGGTCTCATCAAGAAAGCATACGAATTATCCATCCTTTGTGACATTGAAATTGCTCTTATCATGTTCTCTCCCTCTGGCAAACTCAACCACTTCTCTGGCAAAAGAAGAATTGAGGATGTTTTCGCACGTTACATCAACCTTCCTGATCAAGAAAGAGATAATGCTGTGAATTTTCCTGAGCCACAATATGGCAGGAGAATCCAGAACAAAGAGGAACTCCAACAAGAAGTTAGTAGGCTACATCAACAACTTCAATTGGCTGAAGACCAGATAAGGGCATATGAACCAGATCCATTAAAGATGACATCAATGGAAGAGCTCGAATCTAGTGAAAAGAATCTTGTAGAGACTTTAACACGAGTTATGCAAAGAAAGGAATATCTATTGAGCAGCCATTTATCTACTTATGATCCTTCAGCTATTCAGGGGATGCCATCAACTTTTGAGAATGTGGGATGGTTGCAAAATAATAATGGTAGCCAAAGCCACAACCAAATATTTGATGCATCTACTCCTTTGGATCCACTCAGGGATTTGCAATCATCAATTTACGATCCATTTCCACAAGGAACAAATAATTCACAAAGCGATACAAGAAATATTGGAGAGTGTCACGTGACCAACCAAAATGACACGTGGCCTCAAGGATACACGTTATACTCTCATTTGCAGGAAGAGATGGTGGGACCCGACATGTCGAATATGATGACGACACAGGGACAATTGAATCTTCCAATTACAGCCTCCAATTTGCAACCTCCCAACAATGAAGCCGGAGAGCATCAATATGAATGTGAACCTCAAAATCAACTTAACACCCAATAA 903 0.3965 MGRVKLEIKRIENNPNRQVTFSKRRNGLIKKAYELSILCDIEIALIMFSPSGKLNHFSGKRRIEDVFARYINLPDQERDNAVNFPEPQYGRRIQNKEELQQEVSRLHQQLQLAEDQIRAYEPDPLKMTSMEELESSEKNLVETLTRVMQRKEYLLSSHLSTYDPSAIQGMPSTFENVGWLQNNNGSQSHNQIFDASTPLDPLRDLQSSIYDPFPQGTNNSQSDTRNIGECHVTNQNDTWPQGYTLYSHLQEEMVGPDMSNMMTTQGQLNLPITASNLQPPNNEAGEHQYECEPQNQLNTQ 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30384g00008 300 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc30384g00008 300 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Stsc30384g00008 300 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc30384g00008 300 Coils Coil 96 116 - -
Stsc30384g00008 300 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc30384g00008 300 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc30384g00008 300 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc30384g00008 300 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 190 - -
Stsc30384g00008 300 FunFam MADS-box transcription factor 41 13 92 - -
Stsc30384g00008 300 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc30384g00008 300 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Stsc30384g00008 300 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc30384g00008 300 MobiDBLite consensus disorder prediction 276 300 - -
Stsc30384g00008 300 Coils Coil 130 150 - -
Stsc30384g00008 300 Pfam K-box region 95 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc30384g00008 300 Gene3D - 14 89 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30384g00008 Stsc-Chr30384 69046 73353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30384g00008 1 274 Type I MADS-box Gene Family AT1G22130 50.629 1.91e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc30384g00008 K-box 2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30384g00008 - - ahf:112708330 526.168