Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30382g00010 GCAGTTTGTTGGAAGGTTGGAGAAGCTGTGAAGATTGAAGAGATTCAAATTGATCCACCAAAATCAACTGAAGTTCGAATTAAGATGCTTTGTTCCAGCATCTGCCACACTGATATCTCAATGATTCAAGGAACTCCTATGTTTCAATTTTATCCTCTAGTACTTGGACATGAAGGAGTTGGGGTTGTAGAAACTGTAGGGGATGAAGTCAAGAGTGTGAAAGAGGGTGATATGGTGATTCCAACATATGTAGGAGAGTGCCAAGAATGTGAGAATTGCATTTCAGGAAAATCAAATTTGTGCTTGACAAATCCTGTGATTCTGACTGGCTTGATGCCAGATAACACTTCAAGGATGTCCTGCAAAGGCCAGAGGCTATACATCCCTTCTACTTGCGCCACGTGGTCCGAGTACACGGTTATCGATGTTAACTACCTTGTGAAGGTTGATCCAAGCATGAATCCAGCCCATGCCAGCTTCATCTCATGTGGATTCTCAACTGGTTATGGAGGTGCATGGAAGGAAGCCAAGGTTGAAAGTGGATCAAGTGTTGCTGTCTTTGGTCTTGGAGCTGTTGGATTAGGGGCTATAAGTGGAGCAAAAATGTTGGGAGCAACAAAGATTATAGGCATTGACATAAATGAAATGAAGAGAGAAAAAGGTGAAGCATTTGGAATGACTCATTTTATAAATCCAAGTAGTTCTGATAAATCTCCCTCAGCTTTGGTGAAGGAACTAAGTGGTGGAATGGGTGTGGATTATTCATTTGAGTGCACTGGAGTTGGCCCTTTACTTACTGAATCATTAGAAGCTACAAAAGTGGGATCAGGTAAAGCAATAACACTTGGTTTAGGAAATGAACCATTTGTATCATTTGGTCTGCTTTCTATTTTCTTTGGAAGAACTTTGAAAGGATCAGTGTTTGGTGGGTTAAAACCAATATCAGACTTATCCCTCATAGCTGACAAATGCATTAAACAGGAATTCCCTCTTGAAGAACTGTTCACCCATGAGGTCCAATTAACAGATATAGAACAAGCATTTGAGCTATTGAAACAACCCAGTTGTGTGAAAGTTGTCATCAAGATATGA 1092 0.4057 AVCWKVGEAVKIEEIQIDPPKSTEVRIKMLCSSICHTDISMIQGTPMFQFYPLVLGHEGVGVVETVGDEVKSVKEGDMVIPTYVGECQECENCISGKSNLCLTNPVILTGLMPDNTSRMSCKGQRLYIPSTCATWSEYTVIDVNYLVKVDPSMNPAHASFISCGFSTGYGGAWKEAKVESGSSVAVFGLGAVGLGAISGAKMLGATKIIGIDINEMKREKGEAFGMTHFINPSSSDKSPSALVKELSGGMGVDYSFECTGVGPLLTESLEATKVGSGKAITLGLGNEPFVSFGLLSIFFGRTLKGSVFGGLKPISDLSLIADKCIKQEFPLEELFTHEVQLTDIEQAFELLKQPSCVKVVIKI 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30382g00010 363 SMART PKS_ER_names_mod 7 361 IPR020843 GO:0016491
Stsc30382g00010 363 Gene3D - 168 306 - -
Stsc30382g00010 363 SUPERFAMILY GroES-like 1 179 IPR011032 -
Stsc30382g00010 363 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 56 70 IPR002328 GO:0008270|GO:0016491
Stsc30382g00010 363 CDD liver_alcohol_DH_like 1 362 - -
Stsc30382g00010 363 FunFam alcohol dehydrogenase 1-like isoform X1 6 167 - -
Stsc30382g00010 363 PANTHER ALCOHOL DEHYDROGENASE 1 355 - -
Stsc30382g00010 363 Pfam Alcohol dehydrogenase GroES-like domain 23 149 IPR013154 -
Stsc30382g00010 363 Pfam Zinc-binding dehydrogenase 191 310 IPR013149 -
Stsc30382g00010 363 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 154 323 IPR036291 -
Stsc30382g00010 363 Gene3D - 2 358 - -
Stsc30382g00010 363 FunFam S-(hydroxymethyl)glutathione dehydrogenase 168 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30382g00010 Stsc-Chr30382 76186 78474 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30382g00010 23 353 Monolignol Biosynthesis Gene Families AT2G21730 26.567 8.90e-18 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30382g00010 K00121 - gmx:100798341 543.502