Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30382g00003 ATGGCAGATGGTGTGGTTTCCTTCCTTCTAGAAAACTTGTCCCAGCTGCTGGCAAATGAAGCCAAGCTACTATGTGGCTTGGAAGATAGAATCAGATCCCTCCACAGTGAGCTTGAAATTATAAACGTGCTCCTCAAAACCTTTGAAGGGAAGAGGAACAAGAAAGAAATGGAGCAAGTTGTTGTCAACCAAATCAGAGATGTTGCTCAGGAAGCTGAGGATGTCATCGACACCTTCGTTGCCAACGTGGCCATGCACAAGAGGAGATCCAAGCTAGGGAGAATGCTCCATGGTGTTTCCCACACAAAGCTGCTTCATGATGTTGCTGAGAAAATAGAAACCATAAAAGCCACTCTTAGTGATATTCGTGACAACAAGATCAAGTACGATGTCTTCCCACAAGAAAGTGGGTCATTGTCAACAAGAGAAGATGAAGAGAAGATGCAGTTGTTGCACAAGAGAAGAAGAGATGTCGAGGAACAAGATGTAGTTGGTTTCGTCCATGAATCCAAGACAGTCATCAAGCTGCTTATGGAAGAGGGATCAAGGAGCAATGTTGTCTCCATCATTGGTATGGGTGGGTTAGGCAAAACCACCCTTGCTCGAAAGATCTACAACAGCGATGAGGTGAAGTCATATTTCGATTGCCGTGCATGGGTTTATGTTTCAAATGATTGTAGAGTTAAGGAGCTTCTACTTGGCATTCTCAATTGTTTGAAGCCTAACCCTGAATATGAATGTAGTAGCAAAAAGAAGGGGAGAAGACACAAGGGTACACAGAAACCACAAGACCTTAATACTTTAAGCGATGATGAACTGAAGCAAAAAGTGCAGGCTTGCTTGAGGAAGAAGAGGTATCTACTAGTCCTTGATGACTTATGGAAAGCTCAAGATTGGAATGAGGTACAAGATGCTTTTCCAAACGATAATAATGGTAGTAAAATACTAATTACTAGTCGTTTGAAAGAGGTGGCTACACACACTAGTCAAGATCCTCCTTTTTATCTTCAATTACTTACTGAAGAAGAAAGCTGGGAACTCTTCTCCAAGAGAGTTTTTCGAGGAGAAGAGTGCCTGTTTGATCTAGAGCATCTAGGCAGGCAAATAGTCAAAAGTTGTCATGGTTTGCCACTTTCCATTGTTGTCTTGGCAGGGCTTCTAGCACACAAGGAGAAGTCATACCGAGAATGGTCCAAAGTGGTAGGAAATGTCAACTGGTATCTCACTCGAGACGAAACCCAAGTCAAGGACATAGTGCTCAGACTCAGTTATGACAACTTGCCCAGAAGATTAAAACCATGTTTCTTGTATCTTGGGATCTTCCCGGAAGACTTTGAGATACCTGTTAGGCAACTGCTAGAACTATGGGTTGCTGAGGGATTTATACAACAGTCTGGGACCAGATATCCAGAGGAAGTTGCTGAAGATTATCTGTATGAGCTCATTGAACGTAGTTTGGTTCAAGTAGCACAAATGAAGAGTTTTAATGGAGGTGTCAAAACATGTCACATCCATGATCTTCTTCGAGATCTTTGCATTTCTGAGAGCAAAGAAGACAAGCTTTTTGAAATTTGCATGGATAATGACATTTTGGCAAGAAGACAACCTCGCAGGCTATCTCTTCATTGCAATGTTCCTCACTATGTTTCTTCAAGCAACAATGACAATTCAGTTGTACGTTCTTTGTTTTGCTTTAACCAGTACTATCATTTTACTCCAAGCAAGTGGAAACGGTTTTTCAAATCCTTCCGATCTGTTCGAGTATTAGATTTGGGAAGCAACTTTTGTCAAAAGGTGCCTTCTGATTTGGGGCTATTTATCCATTTAAGGTATCTAAGAATATGCTCGCAACATACCAGAATCATTCCAGATTCTATATGTATGCTTCAGAATCTACAGACATTGGACATAGCAGGGCCTTGTAAGATGACTGTCTTGATTTCTTTCCCCAATGAACTGTGGAAACTCAAACAACTAAGGCACTTGCATACGATTACGCCTGTATTGCTACGTGGCCACCATCATTCAAGAGGAGTTGATGAAGTCATGTGGAATCTTCAAACCATCTCTTTCATTGCACTCAATAGGCAAATAGCATATCTATTTGAGAAAGGAAGCTTTCCAAAACTTCAAAAGTTGGGTTTGCAAATCTCCTCAGGCAAGAAGGGGGAACTGCACAAACTGTTACCAAGCCTACAACAATTAAGTCATGTGAACAAGTTACAAGTTTTCTTCCAACGGAAGAGATCAGAAGTGCATTCATCCGAAAGAAACCACATGGAATGGCACATTGGATGCAAGCCACATGAATTTTTACATAGCCTGCAACAGTTAACTAATCTGAGTGCATTGGAAATTAACAATGCTTGGGACCTTCCAACATGTCCTGCTGCGTTTCCTCCATGCCTTACAAAGCTAACTCTGTCAGGGATCACTTGCATCAATGAGAATGGGGTGAATGCCATGGGAAGTCTCACTAGACTTCGAGTTTTGAGAATATGTGGGGTATATTTTTATTCATTAAATGATTCCTTTGAGATTAATTGTGCTGCAAGTAATGGGTTCCCACAGCTTCAGGTGTTTGAGATGAAAAAGTTGAAAGTTCATAGCTGGAAATTAGCCAATGGTGCAATGCCATACCTTCAGCACTTGCTGATCAAATCTTGTCAACTGTTGGATGATCTCCCAAATGAATTGTGGTCTTTGAGCGCCCTGAGACAAGTTCATGTTATGCAACCCTCTGAAGCATTGTCTCTCAGACTAAAAAATATGGAAATGAAGGATGGGTGTGAGCTCATGATCAGAGGGGGTAATTATTATGAAGGTACCAAAGAACTCTGGCTCCCTTTCGTTCATATTTCAGACACGGATCTTCGAATCAGCGACATTTGGCATAATGGTTCTTGGCATCTCAACGGACTGAGCACAATTATTCCGGAAGATGTGCGCAATGATATCCTCTCTTATAATCCGGATATTCAGACGAGCTTCATCGAGTATTTCATTTGCAAAGACTTTCCTACTCCTCTCCCCTTAAGTTGTCTTGGAGTCCGCCTCCTCAGGGAACTGTTACCGTCAACAGTGATGCATGTTATATGTCCTCCTATGATACTATGGGATTTGGCTGTGTCATACGAGATTGGAAAGGACTTTGGAAAAAAGGTTGCGCTGAATGACACTACCGCTGCCAATAATGATGTTACTGAATTGACTACAAAGATCCATGCTCTAATCAAGCGTTCTTGGCGTGTCGAGCTTTCCCTAATTCAGCGAACAGCTAATCACGTTGCTGATGCTTTGGCAAAATATGCTGTTTTGCAGAGTATTGATCAAGTGGAGTGGCTTATTCCAAATGATGATGTGAAGGAGCTCTTAAAGCATGACTACCTAGACTAA 3396 0.4167 MADGVVSFLLENLSQLLANEAKLLCGLEDRIRSLHSELEIINVLLKTFEGKRNKKEMEQVVVNQIRDVAQEAEDVIDTFVANVAMHKRRSKLGRMLHGVSHTKLLHDVAEKIETIKATLSDIRDNKIKYDVFPQESGSLSTREDEEKMQLLHKRRRDVEEQDVVGFVHESKTVIKLLMEEGSRSNVVSIIGMGGLGKTTLARKIYNSDEVKSYFDCRAWVYVSNDCRVKELLLGILNCLKPNPEYECSSKKKGRRHKGTQKPQDLNTLSDDELKQKVQACLRKKRYLLVLDDLWKAQDWNEVQDAFPNDNNGSKILITSRLKEVATHTSQDPPFYLQLLTEEESWELFSKRVFRGEECLFDLEHLGRQIVKSCHGLPLSIVVLAGLLAHKEKSYREWSKVVGNVNWYLTRDETQVKDIVLRLSYDNLPRRLKPCFLYLGIFPEDFEIPVRQLLELWVAEGFIQQSGTRYPEEVAEDYLYELIERSLVQVAQMKSFNGGVKTCHIHDLLRDLCISESKEDKLFEICMDNDILARRQPRRLSLHCNVPHYVSSSNNDNSVVRSLFCFNQYYHFTPSKWKRFFKSFRSVRVLDLGSNFCQKVPSDLGLFIHLRYLRICSQHTRIIPDSICMLQNLQTLDIAGPCKMTVLISFPNELWKLKQLRHLHTITPVLLRGHHHSRGVDEVMWNLQTISFIALNRQIAYLFEKGSFPKLQKLGLQISSGKKGELHKLLPSLQQLSHVNKLQVFFQRKRSEVHSSERNHMEWHIGCKPHEFLHSLQQLTNLSALEINNAWDLPTCPAAFPPCLTKLTLSGITCINENGVNAMGSLTRLRVLRICGVYFYSLNDSFEINCAASNGFPQLQVFEMKKLKVHSWKLANGAMPYLQHLLIKSCQLLDDLPNELWSLSALRQVHVMQPSEALSLRLKNMEMKDGCELMIRGGNYYEGTKELWLPFVHISDTDLRISDIWHNGSWHLNGLSTIIPEDVRNDILSYNPDIQTSFIEYFICKDFPTPLPLSCLGVRLLRELLPSTVMHVICPPMILWDLAVSYEIGKDFGKKVALNDTTAANNDVTELTTKIHALIKRSWRVELSLIQRTANHVADALAKYAVLQSIDQVEWLIPNDDVKELLKHDYLD 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30382g00003 1131 Gene3D - 338 423 IPR042197 -
Stsc30382g00003 1131 FunFam Probable disease resistance protein At1g63360 424 514 - -
Stsc30382g00003 1131 Gene3D - 424 515 IPR036388 -
Stsc30382g00003 1131 CDD RX-CC_like 2 124 IPR038005 -
Stsc30382g00003 1131 PANTHER DISEASE RESISTANCE PROTEIN RP 53 881 IPR044974 GO:0006952
Stsc30382g00003 1131 Pfam NB-ARC domain 172 425 IPR002182 GO:0043531
Stsc30382g00003 1131 Pfam Rx N-terminal domain 5 91 IPR041118 -
Stsc30382g00003 1131 Gene3D Ribonuclease Inhibitor 769 926 IPR032675 -
Stsc30382g00003 1131 PRINTS Disease resistance protein signature 776 792 - -
Stsc30382g00003 1131 PRINTS Disease resistance protein signature 186 201 - -
Stsc30382g00003 1131 PRINTS Disease resistance protein signature 373 387 - -
Stsc30382g00003 1131 MobiDBLite consensus disorder prediction 247 267 - -
Stsc30382g00003 1131 Gene3D - 146 332 IPR027417 -
Stsc30382g00003 1131 Gene3D - 5 117 - -
Stsc30382g00003 1131 Gene3D Ribonuclease Inhibitor 554 759 IPR032675 -
Stsc30382g00003 1131 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 438 IPR027417 -
Stsc30382g00003 1131 Pfam Reverse transcriptase-like 1058 1104 IPR002156 GO:0003676|GO:0004523
Stsc30382g00003 1131 SUPERFAMILY L domain-like 504 910 - -
Stsc30382g00003 1131 FunFam Probable disease resistance protein At1g61300 145 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30382g00003 Stsc-Chr30382 21143 25760 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30382g00003 187 511 WRKY Transcription Factor Family AT5G45050 25.228 9.33e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30382g00003 - - gmx:100814688 1113.98