Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30381g00008 ATGACTTCTCACGAAAAGTCTCCGACTTTGGATGCTGATGCTGATGCTGATGCAGCAGCTTCTCTGCCACCTCAAAAGGGTGATGATCCAATGGGGATAACCGAAGAAACCATGCATGTTCCTCCAAGGAAGCGGCCGAATCTTCTCCTAGAAATTCCCACAAGAACTCCAGAAGAATGCTCCCAAGATTATGTAGCAATCAAAATGCCAATGACACCAAGTCCCACTCCCACCCCAAAGAGAGTGAACTTTCTAGTATCTTCTCGCTCGGTCGATGCTCCTATGCATAATTCTCCGGGGCCTTCATCAGCTTCAAAAGGCAGATCATCCATAAGGAGCATTCTACCGAAATTGAGCTTCAGGTATCGGCCACCAACAGATATCGAAAAGGGTACTACTGCAGCTCAAGAAGGCTCCTCTTCTGGTCATCGCGAAAAGCCATCGATCTCAAGATCATTGTCACTTAGTAAGATATTTACTCCTAGGATTAAAAGAACATCATCATTACCAGTAGAAGATTTGGCACATTCAAATCCTGAATCTGCTCATGGTGGAAGCGTTGGTGGTCCTCTAAATAAAGGAGAGCCACAGCGCAAGATAGCTCGTTCGCTTTCAGTACCTGTCAATAACAAAGATAAAGGCATAAGGAGGATGGATTCCTTTTACCGTATCGTTCCTACCACCCCTCGAGTAAAGGAAGGAAATGCATTGTCGTCCACATCCCCGACAAAGAACTCCGAAATCAACGACGACGATGATGAAGATGGCGAAGATATACCTGAAGAAGAGGCTGTGTGTAGGATTTGTCTGGTTGAGTTATGTGAAGGAGGTGAGACCTTCAAGTTGGAATGTAGCTGCAAAGGAGAACTTGCTCTGGCTCACCAAGAATGTGCAATTAAATGGTTTAGTATCAAGGGTAACAGAACCTGTGATGTATGCAAGGAGGATGTTCGGAACCTACCGGTCACTTTATTACGGATCCAAAGTGTTCGAGCCCGGAATCCAGGAGCAAGTAGGACTCAGCTGGAAGATGCAAATGGATACAGGGTTTGGCAGGAAGTCCCGGTGCTCGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAGTTATTGGTCACGAAAATGGGAACCGGTGCAATCGCCATATCCCTTCCATTTTCCTGTGTGCTTGGCCTACTTTCATCCATGACATCATCAACCATGGTTAAGAGCAGGTTCATCTGGATTTATGCATCTGCCCAGTTTGCTCTTGTGGTTCTCTTTGCACATATATTTTACTCATTGGTTCATGTTCAAGCAGTTCTGTCAATCCTTCTGGCAACATTCGCCGGTTTCGGTGTGGTTATGAGTGGAAGTTCTATTCTCGTCGAGTTCTTCAGATGGAGAAGAAGATGGCAGCAGCAGCAGCAAGATCCACAGCTGATGACACAACCTCGGCCTGCAAACACGCCGCGTCCCAACCACAATCAAACTGCAGAAGCAGAACAAGATCAACAGAACTCAAATCAAAGCTGA 1521 0.4602 MTSHEKSPTLDADADADAAASLPPQKGDDPMGITEETMHVPPRKRPNLLLEIPTRTPEECSQDYVAIKMPMTPSPTPTPKRVNFLVSSRSVDAPMHNSPGPSSASKGRSSIRSILPKLSFRYRPPTDIEKGTTAAQEGSSSGHREKPSISRSLSLSKIFTPRIKRTSSLPVEDLAHSNPESAHGGSVGGPLNKGEPQRKIARSLSVPVNNKDKGIRRMDSFYRIVPTTPRVKEGNALSSTSPTKNSEINDDDDEDGEDIPEEEAVCRICLVELCEGGETFKLECSCKGELALAHQECAIKWFSIKGNRTCDVCKEDVRNLPVTLLRIQSVRARNPGASRTQLEDANGYRVWQEVPVLVIVSMLAYFCFLEQLLVTKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASAQFALVVLFAHIFYSLVHVQAVLSILLATFAGFGVVMSGSSILVEFFRWRRRWQQQQQDPQLMTQPRPANTPRPNHNQTAEAEQDQQNSNQS 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30381g00008 506 MobiDBLite consensus disorder prediction 132 157 - -
Stsc30381g00008 506 MobiDBLite consensus disorder prediction 78 112 - -
Stsc30381g00008 506 SUPERFAMILY RING/U-box 262 316 - -
Stsc30381g00008 506 PANTHER OS02G0165000 PROTEIN 27 475 - -
Stsc30381g00008 506 CDD RING_CH-C4HC3_MARCH 266 314 - -
Stsc30381g00008 506 SMART ringv_2 265 314 IPR011016 GO:0008270
Stsc30381g00008 506 MobiDBLite consensus disorder prediction 68 157 - -
Stsc30381g00008 506 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 321 IPR013083 -
Stsc30381g00008 506 MobiDBLite consensus disorder prediction 1 56 - -
Stsc30381g00008 506 MobiDBLite consensus disorder prediction 232 258 - -
Stsc30381g00008 506 MobiDBLite consensus disorder prediction 471 506 - -
Stsc30381g00008 506 MobiDBLite consensus disorder prediction 174 207 - -
Stsc30381g00008 506 Pfam RING-variant domain 266 313 IPR011016 GO:0008270
Stsc30381g00008 506 ProSiteProfiles Zinc finger RING-CH-type profile. 258 320 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30381g00008 Stsc-Chr30381 54069 57674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30381g00008 252 320 C3H Transcription Factor Family AT2G37950 45.714 1.12e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30381g00008 - - gmx:100788108 695.271