Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc30381g00008 | ATGACTTCTCACGAAAAGTCTCCGACTTTGGATGCTGATGCTGATGCTGATGCAGCAGCTTCTCTGCCACCTCAAAAGGGTGATGATCCAATGGGGATAACCGAAGAAACCATGCATGTTCCTCCAAGGAAGCGGCCGAATCTTCTCCTAGAAATTCCCACAAGAACTCCAGAAGAATGCTCCCAAGATTATGTAGCAATCAAAATGCCAATGACACCAAGTCCCACTCCCACCCCAAAGAGAGTGAACTTTCTAGTATCTTCTCGCTCGGTCGATGCTCCTATGCATAATTCTCCGGGGCCTTCATCAGCTTCAAAAGGCAGATCATCCATAAGGAGCATTCTACCGAAATTGAGCTTCAGGTATCGGCCACCAACAGATATCGAAAAGGGTACTACTGCAGCTCAAGAAGGCTCCTCTTCTGGTCATCGCGAAAAGCCATCGATCTCAAGATCATTGTCACTTAGTAAGATATTTACTCCTAGGATTAAAAGAACATCATCATTACCAGTAGAAGATTTGGCACATTCAAATCCTGAATCTGCTCATGGTGGAAGCGTTGGTGGTCCTCTAAATAAAGGAGAGCCACAGCGCAAGATAGCTCGTTCGCTTTCAGTACCTGTCAATAACAAAGATAAAGGCATAAGGAGGATGGATTCCTTTTACCGTATCGTTCCTACCACCCCTCGAGTAAAGGAAGGAAATGCATTGTCGTCCACATCCCCGACAAAGAACTCCGAAATCAACGACGACGATGATGAAGATGGCGAAGATATACCTGAAGAAGAGGCTGTGTGTAGGATTTGTCTGGTTGAGTTATGTGAAGGAGGTGAGACCTTCAAGTTGGAATGTAGCTGCAAAGGAGAACTTGCTCTGGCTCACCAAGAATGTGCAATTAAATGGTTTAGTATCAAGGGTAACAGAACCTGTGATGTATGCAAGGAGGATGTTCGGAACCTACCGGTCACTTTATTACGGATCCAAAGTGTTCGAGCCCGGAATCCAGGAGCAAGTAGGACTCAGCTGGAAGATGCAAATGGATACAGGGTTTGGCAGGAAGTCCCGGTGCTCGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAGTTATTGGTCACGAAAATGGGAACCGGTGCAATCGCCATATCCCTTCCATTTTCCTGTGTGCTTGGCCTACTTTCATCCATGACATCATCAACCATGGTTAAGAGCAGGTTCATCTGGATTTATGCATCTGCCCAGTTTGCTCTTGTGGTTCTCTTTGCACATATATTTTACTCATTGGTTCATGTTCAAGCAGTTCTGTCAATCCTTCTGGCAACATTCGCCGGTTTCGGTGTGGTTATGAGTGGAAGTTCTATTCTCGTCGAGTTCTTCAGATGGAGAAGAAGATGGCAGCAGCAGCAGCAAGATCCACAGCTGATGACACAACCTCGGCCTGCAAACACGCCGCGTCCCAACCACAATCAAACTGCAGAAGCAGAACAAGATCAACAGAACTCAAATCAAAGCTGA | 1521 | 0.4602 | MTSHEKSPTLDADADADAAASLPPQKGDDPMGITEETMHVPPRKRPNLLLEIPTRTPEECSQDYVAIKMPMTPSPTPTPKRVNFLVSSRSVDAPMHNSPGPSSASKGRSSIRSILPKLSFRYRPPTDIEKGTTAAQEGSSSGHREKPSISRSLSLSKIFTPRIKRTSSLPVEDLAHSNPESAHGGSVGGPLNKGEPQRKIARSLSVPVNNKDKGIRRMDSFYRIVPTTPRVKEGNALSSTSPTKNSEINDDDDEDGEDIPEEEAVCRICLVELCEGGETFKLECSCKGELALAHQECAIKWFSIKGNRTCDVCKEDVRNLPVTLLRIQSVRARNPGASRTQLEDANGYRVWQEVPVLVIVSMLAYFCFLEQLLVTKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASAQFALVVLFAHIFYSLVHVQAVLSILLATFAGFGVVMSGSSILVEFFRWRRRWQQQQQDPQLMTQPRPANTPRPNHNQTAEAEQDQQNSNQS | 506 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc30381g00008 | 506 | MobiDBLite | consensus disorder prediction | 132 | 157 | - | - | |
Stsc30381g00008 | 506 | MobiDBLite | consensus disorder prediction | 78 | 112 | - | - | |
Stsc30381g00008 | 506 | SUPERFAMILY | RING/U-box | 262 | 316 | - | - | |
Stsc30381g00008 | 506 | PANTHER | OS02G0165000 PROTEIN | 27 | 475 | - | - | |
Stsc30381g00008 | 506 | CDD | RING_CH-C4HC3_MARCH | 266 | 314 | - | - | |
Stsc30381g00008 | 506 | SMART | ringv_2 | 265 | 314 | IPR011016 | GO:0008270 | |
Stsc30381g00008 | 506 | MobiDBLite | consensus disorder prediction | 68 | 157 | - | - | |
Stsc30381g00008 | 506 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 251 | 321 | IPR013083 | - | |
Stsc30381g00008 | 506 | MobiDBLite | consensus disorder prediction | 1 | 56 | - | - | |
Stsc30381g00008 | 506 | MobiDBLite | consensus disorder prediction | 232 | 258 | - | - | |
Stsc30381g00008 | 506 | MobiDBLite | consensus disorder prediction | 471 | 506 | - | - | |
Stsc30381g00008 | 506 | MobiDBLite | consensus disorder prediction | 174 | 207 | - | - | |
Stsc30381g00008 | 506 | Pfam | RING-variant domain | 266 | 313 | IPR011016 | GO:0008270 | |
Stsc30381g00008 | 506 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 258 | 320 | IPR011016 | GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc30381g00008 | Stsc-Chr30381 | 54069 | 57674 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc30381g00008 | 252 | 320 | C3H Transcription Factor Family | AT2G37950 | 45.714 | 1.12e-13 | 68.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc30381g00008 | - | - | gmx:100788108 | 695.271 |