Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30381g00005 ATGCTCAGTAAGACTCTTTCTTTTGCCACTGCAATGGGCTGCTGTAATTGCTTCGGCTGGATAGGGGGACAAAGCCGACCGAGGGCTAAGCCCCGCACTGTCAACCGTAATCAGTCCCAGGAGCCCTTGTTGGACAAGGACATGGATGATGACATGGATGACGAGGATGATGATGATGATGAGCAGATGTATGGTGACGACGATGTTGCTAACTCCAGTAGTGGAGATGATAGTGATGGGCTTATTCGCCCCAAGCGATCTGAGGATATTTNNNNNNNNNNCAGAGCAGAGAATGACTTGGTTTGTAGGAAGTTTCCTGTTAAGGAGACTAACAAAGTTGTTCGAACAGAGGATGACGATGGGAACAAGATGGTTAATGAGTATGTTCGTGAATATAAGATTGGTTCTGGTAGCTACGGGAAAGTGGCTCTTTATCGAAACTCACTCGACGGAAAGCACTATGCAATTAAGTCCTTTCACAAGTCTCATTTACTGAAGCTTCGAGTTGCACCCTCTGAGACAGCCATGTCTGATGTTCTACGCGAGGTACAAATTATGAAAATGCTAGGGCATCCTAATATAGTCAATCTTATTGAGGTGATTGATGATCCAGAATCAGATCACTTCTACATGGTACTTGAATATGTGGAAGGCAAATGGGTTTGTGAGGGTACTGGCCGTGCTTGTGCCTTAGTTGAAGAGACTGCTAGGAGATACTTACGAGATATAGTTTCAGGATTGTCATATCTCCATGCTCATAACATAGTACACGGGGATATTAAACCTGATAATCTGCTGATTACACGCCATGGAACGGTAAAAATAGGAGATTTCAGTGTCAGCCAGGCTGTTGAGGATGATAATGATGAGCTTCGCCGATCACCTGGCACTCCCGTTTTCACAGCACCAGAATGTATTTTAGGTCTGACCTATCATGGCAAAGCAGCAGACACATGGGCAGTAGGAGTTACTTTATACTGTATGATATTGGGTGAATACCCCTTTCTTGGGGACACACTTCAAGATACATATGACAGAATAGTCAATAATCAAATTATACTCCCAAATGATCTGAACCCACATGTAAAGAACCTAATAGAAGGACTACTAATGAAAGACCCAAAACTAAGGATGACTCTGGGTGATGTTGCGGCACATAGCTGGGTTGTTGGAGATGATGGGCCGATTCCTGAGTTTCTGTGTTGGTGCAGAAGGAAGCGCTCTGTGCATGAAAGCAACGAGAACAATACTACTGACTAA 1260 0.4381 MLSKTLSFATAMGCCNCFGWIGGQSRPRAKPRTVNRNQSQEPLLDKDMDDDMDDEDDDDDEQMYGDDDVANSSSGDDSDGLIRPKRSEDIXXXXRAENDLVCRKFPVKETNKVVRTEDDDGNKMVNEYVREYKIGSGSYGKVALYRNSLDGKHYAIKSFHKSHLLKLRVAPSETAMSDVLREVQIMKMLGHPNIVNLIEVIDDPESDHFYMVLEYVEGKWVCEGTGRACALVEETARRYLRDIVSGLSYLHAHNIVHGDIKPDNLLITRHGTVKIGDFSVSQAVEDDNDELRRSPGTPVFTAPECILGLTYHGKAADTWAVGVTLYCMILGEYPFLGDTLQDTYDRIVNNQIILPNDLNPHVKNLIEGLLMKDPKLRMTLGDVAAHSWVVGDDGPIPEFLCWCRRKRSVHESNENNTTD 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30381g00005 419 Pfam Protein kinase domain 128 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30381g00005 419 CDD STKc_LKB1_CaMKK 134 389 - -
Stsc30381g00005 419 SUPERFAMILY Protein kinase-like (PK-like) 119 403 IPR011009 -
Stsc30381g00005 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Stsc30381g00005 419 FunFam Serine/threonine-protein kinase Ssp1 122 224 - -
Stsc30381g00005 419 Gene3D Transferase(Phosphotransferase) domain 1 118 417 - -
Stsc30381g00005 419 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 75 391 - -
Stsc30381g00005 419 MobiDBLite consensus disorder prediction 46 66 - -
Stsc30381g00005 419 ProSiteProfiles Protein kinase domain profile. 128 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30381g00005 419 ProSitePatterns Protein kinases ATP-binding region signature. 134 157 IPR017441 GO:0005524
Stsc30381g00005 419 SMART serkin_6 128 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30381g00005 419 FunFam Serine/threonine-protein kinase GRIK2 118 419 - -
Stsc30381g00005 419 MobiDBLite consensus disorder prediction 26 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30381g00005 Stsc-Chr30381 23751 28230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30381g00005 123 396 CBL-interacting serine-threonine protein kinases AT5G35410 33.577 2.04e-45 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Stsc30381g00005 Pkinase 4.8e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30381g00005 K00908 - gmx:100789178 608.216