Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30381g00002 ATGGCTTCAGACTCCAAAACCGAAAACAAGAAGAAGAAGAACAACAACAAAGCCGTTACGAAGCGAAATTCCAAATCGATCACCAAATCGAAGAAGGAGAACAAGAACAAGAACAAGAAGGAGAAGAACGTCTCAGATAATAATAATAACAAGAACAAGAAGAGGGAAAATGAGAATGCGAACAAGGATAAGAAGAACAACAACAGCAAGAAGAAGAAGCTTACACACAGCAATGGCACCTCGAAGCACCGCGGTCGTGAATCTCCGGTTTCTCCAAGCTCCAGCACCGACTCACCGCAAAATCGAGAAGTAGAATCAGTCGAAGAAGAAGAAGATAACACTGTAGTCTCCAATGGACGAACCGATGGCAAAAAACCTAACACATCGAAGCGGAATCGGGAGGAGGTGGAAGACGAAGACGATGGAGACGCCAAATCGAACGTGTTTCCGATGAATCGTATAAGAACAATTGTCAAGGCTGAAGATCCCGAAATGCGCGTTTCTCAGGAAGCGATTTTCGTCGTCAACAAAGCTGCGGAGAAGTTCCTTGAACAGTTTACGCAGGACGCTTATGTTCGGTGTGTTCAGGAGCGAAGGAAGTCTCTGAGCTACAATCACCTAGCGCATGTTGTGAGTAAGCAGCGGAGATATGAATTTATTTCTGATTTTGTTCCTGAGACAGTGAAAGCTGAGGATGCATTGAGAGAGAGGAATTCAGGAGGGAATGGAGGAAATTAG 738 0.4472 MASDSKTENKKKKNNNKAVTKRNSKSITKSKKENKNKNKKEKNVSDNNNNKNKKRENENANKDKKNNNSKKKKLTHSNGTSKHRGRESPVSPSSSTDSPQNREVESVEEEEDNTVVSNGRTDGKKPNTSKRNREEVEDEDDGDAKSNVFPMNRIRTIVKAEDPEMRVSQEAIFVVNKAAEKFLEQFTQDAYVRCVQERRKSLSYNHLAHVVSKQRRYEFISDFVPETVKAEDALRERNSGGNGGN 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30381g00002 245 MobiDBLite consensus disorder prediction 113 146 - -
Stsc30381g00002 245 MobiDBLite consensus disorder prediction 1 148 - -
Stsc30381g00002 245 MobiDBLite consensus disorder prediction 84 101 - -
Stsc30381g00002 245 Coils Coil 43 70 - -
Stsc30381g00002 245 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 122 242 - -
Stsc30381g00002 245 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 149 211 IPR003958 -
Stsc30381g00002 245 Gene3D Histone, subunit A 100 226 IPR009072 GO:0046982
Stsc30381g00002 245 MobiDBLite consensus disorder prediction 37 65 - -
Stsc30381g00002 245 SUPERFAMILY Histone-fold 87 220 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30381g00002 Stsc-Chr30381 2689 5335 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30381g00002 108 210 CCAAT-HAP5 Transcription Factor Family AT1G07980 43.119 1.23e-18 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Stsc30381g00002 CBFD_NFYB_HMF 1.8e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30381g00002 - - adu:107476944 271.552