Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30377g00011 ATGGCACTTTCAGTTGCTTCTTCTTCTTCAGAACCTGCCACTCATAGATACCATGTTTTCATCAGCTTTAGAGGGGAGGATACGCGTAAAGGATTCCTCAGCCATCTTCAAGCCGCTTTTCAGGAAAACCAAATCACAACATTCAGAGACGACGGCATGGAGAAAGGAGCTCCCATCTGGGACGAGCTTGTTGAGGCCATCACAAACTCAAAGTTTTTTCTTGTTATCTTGTCCAAAAACTATGCTTCCTCTAGGTGGTGTTTGAATGAGCTCGTCAAGATCATGGAATGCAAGAACAAGAATGAGCATGTTACTGTGATTCCAGTGTTCTACGGAATACAGCCCACACATATTCGCAATCAGACTGGAACTTATCACACAGCATTCACTAAGCACGAGGGATCTTCGGAGGACCCTTGCCATGTGCAACAATGGAGGACTGCACTCACTCAAGCTGCCGATCTTTCTGGCTTCCCCTTTAATGAGCACAGGGATGATGAAGCTAACCTAATTAGTGAAATTGTAAAAACAATTTTGCCACACCGTGTGAATATCAAGTACTACATGGATGGACGCAACATACCTTTTATTTGTAACAGAAACTATACCCACCTTGAATCTCTATTGATGAGACGCAAGTTGGAGGAGGTTGTTGTGATTGGGATTTGGGGTATGGGCGGTATTGGTAAGTCAACCATTGCTGAGAGGCTCTTCAATAAGTACTCTTGTGTTTATGAAGGCTCTTGCTTCTTGTCAAGTTCAAGAGAATTGGCAAGTCCATGTCTCAATAACATATGCAACATACTTCTTTCCCAATTGTTAAACCAAGATCTTCATATTACCAATATTGAAGTACTAGATTCTGGCATTGTAAGAAAACTCAGGCAGAGGAGGGTTTTCGTTGTACTGGATGATGTGGTTGATTCGCCAATTGTAACCGATTTGGTTCCATTTTTGCGTACTTGCCTCCGTTCTGGTAGCATAGTCATCTTGACAGCAAGAGACAGGAGTGTGCTCACAAGTGGAGGAGTTCAACAAATTCATGAAATCGAGAGAATGAGTTATGGAGACTCCCATGAACTTTTAAGCCATTATGCGTTTTCTGATTCACATCCCAAACAAGGGTATGATGAGCTAACAGAGAGAGTCATAAATTATGCTTCTGGCATTCCATTGGCTTTGAAAATTTTGGGATCATTTCTTCGCGGCAAAAGCGCAAGTGAATGGGACAGTGCATTGAAAAAATTAAGAAAGTGTCCCAATAAAACGATTCAACAAGTGTTGAGGTTGAGTTATGATGGATTAGATGATGAAGAGAAAAAAATTCTTTTGGACATTGCATGTTTTTTTGGGGACTCGTGTAAAAGAGATTCTGTGATAGAAATATTGAATTCTTGTGAGTTTTCTGCAAACATAGGAATAAAAAACTTATTAGACAAGGCTCTTATAAGTACTACTTCAGATAATAATTACATAAAAATACATGGCTTGATACGAAAAAAGTGTTGGGAAATAGTTCATGAAGAAGCTAGAAGAAATGGTGGACAAACAAGAATTTGGGACACCGAAGAACTCTGCAACGTTTTGGAAAACAAAAAAGTAAGTGATTGA 1611 0.4004 MALSVASSSSEPATHRYHVFISFRGEDTRKGFLSHLQAAFQENQITTFRDDGMEKGAPIWDELVEAITNSKFFLVILSKNYASSRWCLNELVKIMECKNKNEHVTVIPVFYGIQPTHIRNQTGTYHTAFTKHEGSSEDPCHVQQWRTALTQAADLSGFPFNEHRDDEANLISEIVKTILPHRVNIKYYMDGRNIPFICNRNYTHLESLLMRRKLEEVVVIGIWGMGGIGKSTIAERLFNKYSCVYEGSCFLSSSRELASPCLNNICNILLSQLLNQDLHITNIEVLDSGIVRKLRQRRVFVVLDDVVDSPIVTDLVPFLRTCLRSGSIVILTARDRSVLTSGGVQQIHEIERMSYGDSHELLSHYAFSDSHPKQGYDELTERVINYASGIPLALKILGSFLRGKSASEWDSALKKLRKCPNKTIQQVLRLSYDGLDDEEKKILLDIACFFGDSCKRDSVIEILNSCEFSANIGIKNLLDKALISTTSDNNYIKIHGLIRKKCWEIVHEEARRNGGQTRIWDTEELCNVLENKKVSD 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30377g00011 536 Pfam NB-ARC domain 207 427 IPR002182 GO:0043531
Stsc30377g00011 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 446 IPR027417 -
Stsc30377g00011 536 Gene3D - 352 436 IPR042197 -
Stsc30377g00011 536 Gene3D - 13 186 IPR035897 -
Stsc30377g00011 536 ProSiteProfiles TIR domain profile. 15 182 IPR000157 GO:0007165
Stsc30377g00011 536 SMART till_3 16 155 IPR000157 GO:0007165
Stsc30377g00011 536 SUPERFAMILY "Winged helix" DNA-binding domain 423 530 IPR036390 -
Stsc30377g00011 536 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 183 - -
Stsc30377g00011 536 Gene3D - 189 346 IPR027417 -
Stsc30377g00011 536 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 530 IPR044974 GO:0006952
Stsc30377g00011 536 FunFam Disease resistance protein (TIR-NBS-LRR class) 346 436 - -
Stsc30377g00011 536 Pfam TIR domain 17 179 IPR000157 GO:0007165
Stsc30377g00011 536 PRINTS Disease resistance protein signature 219 234 - -
Stsc30377g00011 536 PRINTS Disease resistance protein signature 387 401 - -
Stsc30377g00011 536 PRINTS Disease resistance protein signature 293 307 - -
Stsc30377g00011 536 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 158 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30377g00011 Stsc-Chr30377 75891 77673 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30377g00011 13 531 WRKY Transcription Factor Family AT4G12020 27.947 2.85e-47 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30377g00011 - - aip:107614881 709.909