Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30377g00009 ATGCCACTTTCACTTTCTTCTTCGTCGTCTTCTTCAGCACCTACCACTCATCGATACGATGTTTTCATCAGCTTTAGAGGGGAGGATGTGCGTCATGGACTCCTCAGCCATCTTCAAGCCGCTCTCCATGAAAAACAAATCGGAACATTCAGGGACGACGGCATGGATAAAGGAGCTGCCATCTGGGAGGAGCTTGTTGACGCCATCAGGAACGCAAAGTTGTTTGTGGTTATATTCTCCAAAAACTATGCTTCCTCTAGTTGGTGCTTGAAAGAGCTCGTTCAGATCATGGAACACAAAAATAACAAGAATGAGCATGTTGTTGTGATTCCAGTGTTCTACGGAATACAGCCCACACATATTCGCAAGCAGACCGGAACTTACCACACAGCATTTGCTGAGCACGAGGGATCTTCGGAGGACCCTTGCCATGTGCTAGAATGGAGGACTGCACTCGCTCAAGCTGCTGATCTTCTGGCTTCTCCTTTGATGAGAACAGGGTGGTGCCCGGCCCTTTCAAAAATCTTTATTAGTTGTTCTCATGAGTTTGATGATAAGGGAGACTATAAGGAGGTGTACTCAAGGGATGATGAAGCTGAGCTAATTAGAAAAATTGTGAAAGCAATTTTGCCGCATTGTGCGAATATCAAGCACTACATGGATGGACGCAACATACCTTTTATTTGTAACAAAAACTATACCCTCCTTGAATATTTGTTGATAATGAGACGCGAGTTGAAGGAGGTTGTTGTGATTGGGATTTGGGGTATGGGCGGTATTGGTAAGTCAACCATTGCCGAGACTCTCTTTAATAAGTACTCTTCGGAATATGAAAGCTCTTGCTTCTTGACAAATTCAAGAGAATTGGCAAGTCCATGTCTCAATAACATATGCAACACACTTCTTTCCCAATTATTAAACCAAGATCTTCATATCACCAATATTGGAGTAGTAGACTCTCGCATTATAAGTAAAGTCAAGCAGAAGAGGGCTTTTATTGTACTAGATGATGTGGTTGATTCGTCCATTGCATCTGATTTAGTTCCAATGTTGCGTAATTGCCTATGTCCTGGTAGCATAGTCATTTTGACAACAAGGGACAGGAGTGTGCTCACAAGTGGAGGAGTTCAACAAATTCATGAAATCAAGAAAATGAGTTATGGAGACTCCCATAAACTTCTTTCCCGTTATGTGTTTTCTGATTCCCATTCCAAAGAAGAGTATGACAAGCTAACAGCTAGAGTCATAAATTATGCTTACGGCAATCCATTGGCTTTGAAAATTTTGGGATCATTTCTTCGTGGCAAAAGTGTAAGTGAATGGGACAGTGCATTGAAAAAAATTAAGAAATTATCCGAATGA 1362 0.417 MPLSLSSSSSSSAPTTHRYDVFISFRGEDVRHGLLSHLQAALHEKQIGTFRDDGMDKGAAIWEELVDAIRNAKLFVVIFSKNYASSSWCLKELVQIMEHKNNKNEHVVVIPVFYGIQPTHIRKQTGTYHTAFAEHEGSSEDPCHVLEWRTALAQAADLLASPLMRTGWCPALSKIFISCSHEFDDKGDYKEVYSRDDEAELIRKIVKAILPHCANIKHYMDGRNIPFICNKNYTLLEYLLIMRRELKEVVVIGIWGMGGIGKSTIAETLFNKYSSEYESSCFLTNSRELASPCLNNICNTLLSQLLNQDLHITNIGVVDSRIISKVKQKRAFIVLDDVVDSSIASDLVPMLRNCLCPGSIVILTTRDRSVLTSGGVQQIHEIKKMSYGDSHKLLSRYVFSDSHSKEEYDKLTARVINYAYGNPLALKILGSFLRGKSVSEWDSALKKIKKLSE 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30377g00009 453 PRINTS Disease resistance protein signature 325 339 - -
Stsc30377g00009 453 PRINTS Disease resistance protein signature 419 433 - -
Stsc30377g00009 453 PRINTS Disease resistance protein signature 251 266 - -
Stsc30377g00009 453 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 157 IPR035897 -
Stsc30377g00009 453 Gene3D - 227 378 IPR027417 -
Stsc30377g00009 453 Pfam TIR domain 19 213 IPR000157 GO:0007165
Stsc30377g00009 453 Gene3D - 384 453 IPR042197 -
Stsc30377g00009 453 FunFam Disease resistance protein (TIR-NBS-LRR class) 15 169 - -
Stsc30377g00009 453 Gene3D - 15 219 IPR035897 -
Stsc30377g00009 453 ProSiteProfiles TIR domain profile. 17 213 IPR000157 GO:0007165
Stsc30377g00009 453 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 450 IPR027417 -
Stsc30377g00009 453 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 449 IPR044974 GO:0006952
Stsc30377g00009 453 SMART till_3 18 158 IPR000157 GO:0007165
Stsc30377g00009 453 Pfam NB-ARC domain 247 449 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30377g00009 Stsc-Chr30377 53299 55733 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30377g00009 19 452 WRKY Transcription Factor Family AT4G12020 25.909 3.11e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30377g00009 - - aip:107614881 568.54