Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30377g00005 ATGGCACTTCTAGGTGCTCCTTCGTCGTCTTCTTCTTCTCGAGCAACTGCCACCCATCGATATGATGTGTTTATCAACTTCAGAGGCGAGGACACGCGTTACAACTTCATCAGCCATCTTCATTCAGCTCTCTGCAGAAAGGGCATCGACACCTTCGTTGATTACGGAATCCAGAAAGGAGATGAGATCTGGAACGGACTTGTTGAGGCCATCAGAGAGTCAAAGTTGTTTCTTGTTATCTTCTCTCAAAACTATGCTTCCTCTAAGTGGTGCTTGAAAGAGCTCGTTGAGATCATGGAATGCAGGAACAAGAACGAAAATAATGTTATTGTGATTCCAGTGTTCTACAAAATAGATCCCAAAACTGTTCGCTACCAGACTGGAAGTTACAGCACAGCATTTGATAAGCATGGAAAAAGATCCTCCGACAGTAAGCATGTGCAGCAATGGAGGAATGCACTCTTTGAAGCTTCCACTCTTTCAGGCTTCCATTGCGATGACCGCAGGGAAGAAGCAAAGTTGATTGAGGAAATTGTGGAAACAATTCTTCCAAAAGTGAGGAAGAATTGCTATAGAGACGAACACAAAAGCCCTTTTATTTGCAACAGTAACTATGCCTCTGTTAAATCCTCACTCAGATTAAAGTTGGAAAAAGTTCATGTGATTGGAATCTGGGGTATGGCTGGTATTGGCAAGACAACCATTGCTACTGCTCTTTTTAATGAATGTTCTTCAGAATACGAAGGTCGTTGTTTCTTAACCTTTTCAGAAGGGCAAGGTGTTAACCACGTATGCGCTAGAATTCTTTCTGAATTACTAAATGAAGATCTTCGTGTTGATAACATCCGAGTAATACACTCTCGAATTATCCGAAAACTCAAGCATATGAAGGTTTTCATCGTGCTAGATGATGTGACTAATTCACAACAAATTCTAACTAAATTGATTCAAATGTTTCATGATTGGTTGAGTGTCGGTAGTAGAATCATTTTGGCAACAAGGGACAGAAATGTGCTTACAAGTGGAGGAGTTGAAGAAATCCATGAAGTGAAGGAAATGGATTTTGAGGACTCCCTTGAACTTTTTAGCTATTATGCCTTTAATGATTCTCAACCTAAAGAGGGTTATTACCAGCTATCAACAAGAGTCGTAGCAGATTATGCCCAAGGGGTGCCATTAGCATTAACAATTCTGGGATCATTTCTTAAAACCAAAGGAGAAAGGGAATGGGATAGCGCATTGAGAAAACTAAGAAAGTATCCCAATGCAGATATTCATCAAGTGTTGAGATTGAGTTATGACGCATTAGATGATGATGAAAAAAACATCCTTTTTCATGTTGCAGGCTTTTTCATCGGGAATGAAATGGAGGAAGTAATAAGAAGATTAAATTCGTTTGGTTTCTTTGCTGACATAGGGATAAGAAACCTACTTGACAAGTCTCTTATAAGTGTTAATTCATATAATGATGAAAAATTCATAAAAATGCATGCCTTGATAAAGGAAATGTGTTGGAAAATCAGTTGTGAAGAACAAAGCAAAAATGGTGGACAACAAACAAGACTGTGGAGTACTGAAGAAGTCTGCAATACATTGCAAGATGAAAGAGATATTCATGGAGTTGAAAGCATGATTGCGGATATGAATCAAATTACAATAGATTCACGTTTAATCTTCGTTGCATTGAGGAAGATGCCAAAGTTAAGGTTACTCGCTTTAAGAGGAAATATCAACCCAGATATTGGATGGAATGGAGAGCTTCCAGAGGATTTTCAACTTCCTAATGACTTGAGGTATATTGGGTGGGATAAATGCCCACTTAAGTTTGTTCCCTCCATTTGTTGGCCCAAACAGCTTGTTGAGCTTTCCTTTCATGGCAGCGATGTTGAAAAACTTTGGGATGCAGTACAGGATGTACCAAGTTTGGAGAAACTTGACCTCCGTCGCTGCAAACGCTTGAAAGAGTGCCCAAATTTGGAAGGTGCCCCGAATCTCAAACTTGTAACATTCTTTGGATGTGAAAGCTTACAAGATGTTCATCCATCTATTTTGTCTCACCCCAAGATTGAAGAAATAAATGTGAGCTATTGCACATCGCTGAAGAGGCTTTGCAGTGACAATTGTCCACCCTCTCTTCGTGGCTTGTGGGCCACTGGTTGCTCGAATTTGGAAGAATTCTCAATCTCGATGAAGGCTGATAATTCCAAATTATTGGAGTTATGTTTATCATCAACGGCTTTGAGGGAAGTGCCGTCCACTATCATGAATCTCAAAAATATTGGGTGTTACGGGTTTCACATCATCTACGCTCTTGAGAAACTTCCTCCAAACCTTGCCCGCGCAATTTTACTCATGGATCCAATAAAATATGAAGACGACCCATACATCATCTTAAGTAGAATCTTTCCTTCCCCTCCTTTCTTGTGTCTCAAGCAATTAATTTTCTTCGAATGTCAGAGCTTGTCTAAACTCCCAGACGACATTCATGTCTTACAATCATTGCAAGTGTTAGAAGTGGAAAGTTGTCCTGTCATTACAACTCTGCCGGAAAGCATTAAGAATCTTCAACAGCTCATGGATATTTACATCTATGACTGTGAAATGCTTCAATACATACCCCCTCTTCCCCCATCTGTTATATCATTTTGTGCAGTAAACTGCAAATCTTTGGAGACAGTCTCATCAAGTTTAACCAGTGAACCATCCAGGAACGACATTGCATCTTTCAAGTTCCATAACTGCACAAAGTTGGATGATCATGCATATATACACGTTTTGAAAGACTTGAAATCCAGGGTAGAACTTGTGGCAAGTGATGGTGCATACAATAATAATGCTAATACATTCTTCTATTATTTACCAACTGAAGAGAGCATGCTTACTAATGATTGGTTCCCAAGGTACTACCATCCAGAAGGTTCATCATTCATCTTGGCAGTCCCTCCAGATGACAAGATTTCCCCTTGTCTTGTTCTCTGCATGTTGCTTTCTAACTACCAATCTTGGAAATTCATCAACAGCATGCTTTTTGGATGTAGATGCTACATATCAGAAAGGGGTTCCAACGAACGGGAATGCATAGCAGCTTCTGGCGTTAGAACAAGCTTGACCAGTAATATTCGCTCTATGTTTGGAGCCAAAATGGTGTCAGATCAATATCACATGGCGTTATGGTATGATTCAAAGTTTTCCAAAAGGATAATGGAAGCAATCAAGGAGAGAAACAGGGGCAATACTAGTGGCAATCCTATCCTTATATTTGATTTGCATGCAAAAACAGTGAATAATGAGGAAGTATGGATAAAAGGGTGTGGGGTCCATTGGATGCATGTAGATGTCAAAGATGAAGGAGAAGAAGAAGAGGTTAGTCCAGATGTCGTTATTGACGGCTATCGATCTCATGACTTGGAGAACATTCAGAGAACCGGAGAAAGAGTGGATAATGTATATTGTTGTGCATTGGATATTCTCAATTGGTTCCAAAGATCATTGGTTAGTTGTCTTGGTTTGTCTAGTGGAGTCGAAATTCATCCTCCATCAAGCCCAACTACAGCCTTTATCTCAACGGCTGCCACAGCTTCTTCTTCCGTTATTCCAGCAGCCGCCGCCTCTACTACGCGGACCAACCCGGCTGAACATGAAGACCTAGAGGCTCCACAGGTTGACACTTGGGAGAGGACCAAGAATGTATCTACGGTCTCAGATACTGCAAAAATGGAGCCTCCATTAGGGAAGGCTGATCAAGAGAGATTCACTGTAGAAGTGGTCGATCAAGTAAACGAAGTACTGGCATGCTTGAACCATCCTCTGGAGGAGATCTCAGGCAGTAGTGAGTTGAGGGATCGACTTATTAACGCCACCTGTTCACTAGGCTCCAAGATTTCGGAGGAGACTAACTCAGCCTTGGTGGCATTCATCGAGGAAGTCTTAGTAGTCTACCCTTCTGATCAGTCTATCCAGGCTTTGGAAGATCATGACCGCCAGCTCGAGAAATATGAAGGGACGGCCATAGAACAGGAGGAGAACACGAGATCGCAGGCTGTAGAAAACAAGAATGCAGATTTGATCAGCAAAGTCGACAAGATCTATGCGTCTGATGAATCTTCTGCCCTGGTTGAATCTGTTAATCAAGCCACCCGTGACCTCGAGCAAGCTGAAAGAAGGGTTCAGAGGTTGAGGCAGCGTCAAGAAGACTTAAAATTGCAGCTGAGGATCTATTTTCGATAG 4227 0.4126 MALLGAPSSSSSSRATATHRYDVFINFRGEDTRYNFISHLHSALCRKGIDTFVDYGIQKGDEIWNGLVEAIRESKLFLVIFSQNYASSKWCLKELVEIMECRNKNENNVIVIPVFYKIDPKTVRYQTGSYSTAFDKHGKRSSDSKHVQQWRNALFEASTLSGFHCDDRREEAKLIEEIVETILPKVRKNCYRDEHKSPFICNSNYASVKSSLRLKLEKVHVIGIWGMAGIGKTTIATALFNECSSEYEGRCFLTFSEGQGVNHVCARILSELLNEDLRVDNIRVIHSRIIRKLKHMKVFIVLDDVTNSQQILTKLIQMFHDWLSVGSRIILATRDRNVLTSGGVEEIHEVKEMDFEDSLELFSYYAFNDSQPKEGYYQLSTRVVADYAQGVPLALTILGSFLKTKGEREWDSALRKLRKYPNADIHQVLRLSYDALDDDEKNILFHVAGFFIGNEMEEVIRRLNSFGFFADIGIRNLLDKSLISVNSYNDEKFIKMHALIKEMCWKISCEEQSKNGGQQTRLWSTEEVCNTLQDERDIHGVESMIADMNQITIDSRLIFVALRKMPKLRLLALRGNINPDIGWNGELPEDFQLPNDLRYIGWDKCPLKFVPSICWPKQLVELSFHGSDVEKLWDAVQDVPSLEKLDLRRCKRLKECPNLEGAPNLKLVTFFGCESLQDVHPSILSHPKIEEINVSYCTSLKRLCSDNCPPSLRGLWATGCSNLEEFSISMKADNSKLLELCLSSTALREVPSTIMNLKNIGCYGFHIIYALEKLPPNLARAILLMDPIKYEDDPYIILSRIFPSPPFLCLKQLIFFECQSLSKLPDDIHVLQSLQVLEVESCPVITTLPESIKNLQQLMDIYIYDCEMLQYIPPLPPSVISFCAVNCKSLETVSSSLTSEPSRNDIASFKFHNCTKLDDHAYIHVLKDLKSRVELVASDGAYNNNANTFFYYLPTEESMLTNDWFPRYYHPEGSSFILAVPPDDKISPCLVLCMLLSNYQSWKFINSMLFGCRCYISERGSNERECIAASGVRTSLTSNIRSMFGAKMVSDQYHMALWYDSKFSKRIMEAIKERNRGNTSGNPILIFDLHAKTVNNEEVWIKGCGVHWMHVDVKDEGEEEEVSPDVVIDGYRSHDLENIQRTGERVDNVYCCALDILNWFQRSLVSCLGLSSGVEIHPPSSPTTAFISTAATASSSVIPAAAASTTRTNPAEHEDLEAPQVDTWERTKNVSTVSDTAKMEPPLGKADQERFTVEVVDQVNEVLACLNHPLEEISGSSELRDRLINATCSLGSKISEETNSALVAFIEEVLVVYPSDQSIQALEDHDRQLEKYEGTAIEQEENTRSQAVENKNADLISKVDKIYASDESSALVESVNQATRDLEQAERRVQRLRQRQEDLKLQLRIYFR 1408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30377g00005 1408 ProSiteProfiles TIR domain profile. 19 186 IPR000157 GO:0007165
Stsc30377g00005 1408 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 726 IPR044974 GO:0006952
Stsc30377g00005 1408 Gene3D Ribonuclease Inhibitor 538 706 IPR032675 -
Stsc30377g00005 1408 SMART AAA_5 218 354 IPR003593 GO:0016887
Stsc30377g00005 1408 Gene3D Ribonuclease Inhibitor 707 908 IPR032675 -
Stsc30377g00005 1408 SUPERFAMILY "Winged helix" DNA-binding domain 424 532 IPR036390 -
Stsc30377g00005 1408 Coils Coil 1368 1402 - -
Stsc30377g00005 1408 Pfam TIR domain 21 187 IPR000157 GO:0007165
Stsc30377g00005 1408 PRINTS Disease resistance protein signature 221 236 - -
Stsc30377g00005 1408 PRINTS Disease resistance protein signature 292 306 - -
Stsc30377g00005 1408 PRINTS Disease resistance protein signature 637 653 - -
Stsc30377g00005 1408 PRINTS Disease resistance protein signature 388 402 - -
Stsc30377g00005 1408 Gene3D - 17 192 IPR035897 -
Stsc30377g00005 1408 SMART till_3 20 160 IPR000157 GO:0007165
Stsc30377g00005 1408 Coils Coil 1322 1342 - -
Stsc30377g00005 1408 Pfam NB-ARC domain 218 430 IPR002182 GO:0043531
Stsc30377g00005 1408 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 188 - -
Stsc30377g00005 1408 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 445 IPR027417 -
Stsc30377g00005 1408 Gene3D - 353 437 IPR042197 -
Stsc30377g00005 1408 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 163 IPR035897 -
Stsc30377g00005 1408 SUPERFAMILY L domain-like 562 896 - -
Stsc30377g00005 1408 Gene3D - 197 347 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30377g00005 Stsc-Chr30377 34762 43204 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30377g00005 14 865 WRKY Transcription Factor Family AT4G12020 26.759 4.33e-66 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30377g00005 - - aip:107614877 1471.83