LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc30376g00002	ATGGATCGAAGCGGTGGAATTGCGACTGGGCCGCGCGATGTTGTAGGAGTTAGGAACGGTTCCGACATTGCGTGTAAACCCTTAAAGAATTTGAATGGCAAAATCTGTCAGATATGTGGTGATACTGTTGGATTAACAGCCACTGGCGATGTCTTTGTTGCTTGCAAAGAATGTTCCTTCCCACTTTGTCACCGTTGCTATGAATGTGAGTGCGAGAATGGGAGCCAATCTTGTCCCCAGTGCAAGACCAGATACAATAGTCACAAAGATAGTTCCCATTTGGAGGGAGACGACGACGATGATGATGATGATGAAGACGATGATGTTGATGATTTAGAGAATGAGGTAAATTATGGAGAAGGAAATATTAACAAAGCAGGGATGCAATGGGAAGAAGATGCTGACCTCTCTTCTTCGTCAGGACATGATTCTCGGATGGCAAATTCAAATCCACATATCACAAATGGGCAGCTGCTATCTGGTGAAAAACCGTGTGCTACCCCTGATAAAAAATCTGTTCAAGCTACATCTGGTCCTTTGGGTCCATCCAAGATGCAATCACTTCCCTACACTGGTCCAAAGCAGCCAGGTCCTGAGAGTGATGAAGAGGTCAGAAGAGTGCCAGAGATAGGAGGTGAATCTGCTGGACCTTCAGCTTCCCGTCCAGGTGCCGGTCCAACTGGTGGGCAAGAACGTGGCCAGGGGACTGGGGATGGTCAACGGAAGAGAGGCAGAAGCCCGGCAGACAAAGAAAACAAACGGCTAAAGAGGCTACTGAGGAACAGAGTGTCAGCTCAACAAGCAAGGGAGAGGAAGAAGGCGTATTTGATCGATTTGGAAACCAGAGTCAAAGACTTGGAGAAGAAGAACTCAGAGCTCAAAGAGAGACTTTCCACTTTGCAGAATGAGAATCAAATGCTAAGACAAATATTGAAGAACACAACAGCTAGCAGGAGAGGGAGCAATAGTGGTACAAATGCTGAATGA	987	0.4661	MDRSGGIATGPRDVVGVRNGSDIACKPLKNLNGKICQICGDTVGLTATGDVFVACKECSFPLCHRCYECECENGSQSCPQCKTRYNSHKDSSHLEGDDDDDDDDEDDDVDDLENEVNYGEGNINKAGMQWEEDADLSSSSGHDSRMANSNPHITNGQLLSGEKPCATPDKKSVQATSGPLGPSKMQSLPYTGPKQPGPESDEEVRRVPEIGGESAGPSASRPGAGPTGGQERGQGTGDGQRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELKERLSTLQNENQMLRQILKNTTASRRGSNSGTNAE	328

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc30376g00002	328	SMART	brlzneu	249	313	IPR004827	GO:0003700\|GO:0006355
	Stsc30376g00002	328	SUPERFAMILY	Leucine zipper domain	253	311	IPR046347	GO:0003700\|GO:0006355
	Stsc30376g00002	328	PANTHER	TRANSCRIPTIONAL ACTIVATOR HAC1	171	325	IPR044280	GO:0000981\|GO:0045944
	Stsc30376g00002	328	MobiDBLite	consensus disorder prediction	86	272	-	-
	Stsc30376g00002	328	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	19	110	IPR013083	-
	Stsc30376g00002	328	Pfam	bZIP transcription factor	250	311	IPR004827	GO:0003700\|GO:0006355
	Stsc30376g00002	328	SUPERFAMILY	RING/U-box	22	106	-	-
	Stsc30376g00002	328	MobiDBLite	consensus disorder prediction	170	190	-	-
	Stsc30376g00002	328	Coils	Coil	248	317	-	-
	Stsc30376g00002	328	CDD	bZIP_HY5-like	254	305	-	-
	Stsc30376g00002	328	MobiDBLite	consensus disorder prediction	236	272	-	-
	Stsc30376g00002	328	MobiDBLite	consensus disorder prediction	140	161	-	-
	Stsc30376g00002	328	Gene3D	Single helix bin	272	313	-	-
	Stsc30376g00002	328	ProSiteProfiles	Zinc finger RING-type profile.	36	82	IPR001841	-
	Stsc30376g00002	328	Pfam	Zinc-binding RING-finger	26	102	IPR027934	-
	Stsc30376g00002	328	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	256	271	IPR004827	GO:0003700\|GO:0006355
	Stsc30376g00002	328	FunFam	Transcription factor HY5	272	313	-	-
	Stsc30376g00002	328	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	251	314	IPR004827	GO:0003700\|GO:0006355
	Stsc30376g00002	328	MobiDBLite	consensus disorder prediction	96	115	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc30376g00002	Stsc-Chr30376	8539	13057	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc30376g00002	189	310	bZIP Transcription Factor Family	AT5G11260	71.545	1.31e-51	167

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Stsc30376g00002		zf-UDP	2.7e-34	CL0229

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc30376g00002	K10999		-	gmx:548004	460.299