Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30375g00008 ATGGAACATACTGAATCCGATTCTGCTTCTTCTTCGCTTCCCAATGGCGGTGGTGACTCCATCACCGCCACCCAGCAAGACCCTCAGCTTGCTGCTTCGTCCGATCACTGCACCGACGATCTTCAGCCGTCAGATCTCCATCAAACGGCTCAGGATGGTTCCCTCTCTGATGAGCTTCAGAGTAAGCTCGATTTGAAGGGCTTGGAAGAGGGTGGCGAGATTGGGGATAAAGCTTCAAACTTTGTCCAAGTTGATGGTGGGGGTGTTACTAATGGTGATGATGGCGGTGATGAGGGTTTTGATAACTGGCGGTGGGATACCAATAGTTGGGAAGAGGAGAATGTCAATGAGGGTGTTGTGGATGCTGATTATGATGGGGTAGTTGGTGGCTGTGATGATGCTAATGGGGATGATGATGATGATGATGATGTTGATGGAGTTGAAAAGAGGGAAGAGACAAGTGTTGGTAGTGGTGGTAGGGCACAACACCAGTACCCTTGGAGGCCTGATGCTCCGGATTGTGCATTTTATATGAAGACTGGGAGTTGCAAATTTGGGATCAATTGCAAGTTCAATCACCCCATTAATAGGAGGAAAAGCCAGGCTGCTAAGGAGCGATCAGCAGAAAGAGAAGAAGAACAAGCAGAAAGACCAGGACAGACTGAATGCAAGTTTTATCTAAGGTCGGGTGGTTGTAAATTTGGAAAAGATTGTAAATATAACCATGCAAAAGTGAAAGACTCAACAGAGGAGGCAGAACTCAATTTTCTTGGCCTGCCTATTCGCTTGGGAAAGAGAGAATGTCCTTATTACATGCGCACTGGATCCTGTAAGTTTGGAGCGAACTGCAAGTTTAATCATCCCGACCCTACATCCATTGGAGGCTCTAATCCGTCTTCAGGGTATAGTAATGGCCGGTCTGATCCTTCTTCAGGGTATAGTAATGGCCGATCTAATCCTTCTTCAGGGTATAGTAATGGGGGATCTATTTCATTGCATGGTGTATCACAACAGTCTGTGTCGACATGGTCTTCTCCTAGAACAGTAAATGAAACATCTCCTTTTGTGCCAATGATGCTTTCACCCCCAAGTCCTGATTGGAATGCATATCAGGCACCTACCTACCTATCTGAGAGGAGTATGCATCCGCCTCCGTCATATGTCATGAACAACCCAGTGATCGAAACAAATGTTTATATACACCCGCAAAAGCGAATTCAAGGTGATGAGTTTCCTGNNNNNNNNNNTGGTGAACCTGAATGCAGCTACTTCCTGAAAACTGGGGATTGCAAGTTCAAATCCAATTGTAAGTTTCACCATCCAAAGAATCGGATTGCAACATTACCTCCATGCAACCTCAATGACAAAGGCCTGCCTCTTAGACCTGACAAGAGTGCCTGCGTACATTACACAAGATACGGACTGTGCAAGTTTGGACCGGCTTGTAAGTATGACCACCCGATAAACCCGGTGCCCCCAGCTGGTGTTGAGGTTGATGGGATGGGTGGAAATGGAGGCGGTGGTGATCCCACAATTCAGCAAGTTCTGTAA 1551 0.4636 MEHTESDSASSSLPNGGGDSITATQQDPQLAASSDHCTDDLQPSDLHQTAQDGSLSDELQSKLDLKGLEEGGEIGDKASNFVQVDGGGVTNGDDGGDEGFDNWRWDTNSWEEENVNEGVVDADYDGVVGGCDDANGDDDDDDDVDGVEKREETSVGSGGRAQHQYPWRPDAPDCAFYMKTGSCKFGINCKFNHPINRRKSQAAKERSAEREEEQAERPGQTECKFYLRSGGCKFGKDCKYNHAKVKDSTEEAELNFLGLPIRLGKRECPYYMRTGSCKFGANCKFNHPDPTSIGGSNPSSGYSNGRSDPSSGYSNGRSNPSSGYSNGGSISLHGVSQQSVSTWSSPRTVNETSPFVPMMLSPPSPDWNAYQAPTYLSERSMHPPPSYVMNNPVIETNVYIHPQKRIQGDEFPXXXXGEPECSYFLKTGDCKFKSNCKFHHPKNRIATLPPCNLNDKGLPLRPDKSACVHYTRYGLCKFGPACKYDHPINPVPPAGVEVDGMGGNGGGGDPTIQQVL 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30375g00008 516 SUPERFAMILY CCCH zinc finger 263 289 IPR036855 GO:0046872
Stsc30375g00008 516 MobiDBLite consensus disorder prediction 288 357 - -
Stsc30375g00008 516 SUPERFAMILY CCCH zinc finger 223 252 IPR036855 GO:0046872
Stsc30375g00008 516 SUPERFAMILY CCCH zinc finger 168 197 IPR036855 GO:0046872
Stsc30375g00008 516 MobiDBLite consensus disorder prediction 132 147 - -
Stsc30375g00008 516 SUPERFAMILY CCCH zinc finger 463 489 IPR036855 GO:0046872
Stsc30375g00008 516 Gene3D - 413 494 - -
Stsc30375g00008 516 SMART c3hfinal6 415 442 IPR000571 GO:0046872
Stsc30375g00008 516 SMART c3hfinal6 462 488 IPR000571 GO:0046872
Stsc30375g00008 516 SMART c3hfinal6 168 195 IPR000571 GO:0046872
Stsc30375g00008 516 SMART c3hfinal6 217 244 IPR000571 GO:0046872
Stsc30375g00008 516 SMART c3hfinal6 262 289 IPR000571 GO:0046872
Stsc30375g00008 516 MobiDBLite consensus disorder prediction 97 111 - -
Stsc30375g00008 516 Gene3D - 143 204 - -
Stsc30375g00008 516 SUPERFAMILY CCCH zinc finger 420 445 IPR036855 GO:0046872
Stsc30375g00008 516 Gene3D - 205 293 - -
Stsc30375g00008 516 MobiDBLite consensus disorder prediction 289 357 - -
Stsc30375g00008 516 ProSiteProfiles Zinc finger C3H1-type profile. 461 489 IPR000571 GO:0046872
Stsc30375g00008 516 ProSiteProfiles Zinc finger C3H1-type profile. 262 290 IPR000571 GO:0046872
Stsc30375g00008 516 MobiDBLite consensus disorder prediction 495 516 - -
Stsc30375g00008 516 ProSiteProfiles Zinc finger C3H1-type profile. 168 196 IPR000571 GO:0046872
Stsc30375g00008 516 ProSiteProfiles Zinc finger C3H1-type profile. 217 245 IPR000571 GO:0046872
Stsc30375g00008 516 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 219 242 IPR000571 GO:0046872
Stsc30375g00008 516 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 417 442 IPR000571 GO:0046872
Stsc30375g00008 516 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 172 194 IPR000571 GO:0046872
Stsc30375g00008 516 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 265 288 IPR000571 GO:0046872
Stsc30375g00008 516 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 464 487 IPR000571 GO:0046872
Stsc30375g00008 516 MobiDBLite consensus disorder prediction 1 164 - -
Stsc30375g00008 516 MobiDBLite consensus disorder prediction 7 58 - -
Stsc30375g00008 516 PANTHER PROTEIN PHOSPHATASE RELATED 23 489 - -
Stsc30375g00008 516 ProSiteProfiles Zinc finger C3H1-type profile. 416 443 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30375g00008 Stsc-Chr30375 66857 71064 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30375g00008 165 492 C3H Transcription Factor Family AT1G04990 34.835 1.18e-60 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc30375g00008 zf-CCCH 1.8e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30375g00008 - - adu:107491206 746.888