Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30375g00003 ATGAAAATGTTACCCGGGGATTCCAAGTCTAAATCCAAACGTAAATCTCGCTGTCAGAAGAATAAGCTTGCAAGTTTACCTCCATGCAATCTCAATGACAAGGGCCTGCCTTTGAGACCTGACAAGAGTGCATGCCCCGAATACACTTCCCTCGGAATATGCAAGTTTGGAGCAGGTTGTAAGTTTGACCACCCAACAAATCCTCTGCAGCTGTCGACGATCCATTCACTTGATCAGCAATCCTGCACAAACTCAGCTGGTGTTGAGGTGGCTTGGATGGGTTCAAATGATCCCACAATTCAGCAAGATCTGTTAACTTTCTTTGTCAAGGACCTTCTTTCCTATCTTTGCATGTAG 357 0.451 MKMLPGDSKSKSKRKSRCQKNKLASLPPCNLNDKGLPLRPDKSACPEYTSLGICKFGAGCKFDHPTNPLQLSTIHSLDQQSCTNSAGVEVAWMGSNDPTIQQDLLTFFVKDLLSYLCM 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30375g00003 118 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 41 65 IPR000571 GO:0046872
Stsc30375g00003 118 MobiDBLite consensus disorder prediction 1 28 - -
Stsc30375g00003 118 Gene3D - 37 87 - -
Stsc30375g00003 118 SUPERFAMILY CCCH zinc finger 41 69 IPR036855 GO:0046872
Stsc30375g00003 118 ProSiteProfiles Zinc finger C3H1-type profile. 39 67 IPR000571 GO:0046872
Stsc30375g00003 118 PANTHER PROTEIN PHOSPHATASE RELATED 6 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30375g00003 Stsc-Chr30375 45612 46338 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30375g00003 3 87 C2H2 Transcription Factor Family AT3G02830 38.824 2.76e-11 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc30375g00003 zf-CCCH 1.5e-05 CL0537