Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30375g00002 ATGGGAAATCTCCAAACAAAATGGCCAGGCACTGCAATCCAACCCCCTCAATCCAATTCACCTCCACCTTCTTCTTCTTCTTCGTTTCCCAATTGCAGTGGCCAACCACACCTACAGCCACCACTGGCTCCTCTTTCTTCCCAGGAAGGTGCCCTCTGCGGGGAGCTTCAGGGCAAACTAGATTTGAAGGGTGCTACTACTGGTGAAGGTGTTGAGCGTGGTGATGAAGTTGATGATGATCGGGATATTGAGGGCTGGGAGAGCAATAGTTGGGAACATGATTGTGTGAGGGCGAGGGTGAGGGTGAGTGTTAATGATGGTATTGGAGCTGACAAGAGAAAAAAGAGAGGTGGTGGTGGTGGGAACAAGAGTCAAGGCCAGTTTCCTAAGGTTGCTAAGGAGCAGGCCCGGGAAAGAGAAGAACCAGCAGAAACATCAGGCCAAACAGAATGCAAGTATTATCCAACTTCTGGGGGATGTACGAAAAGAGAGGATTCAACACTACCGGCTGCAGAACTCAACTTTCTTGACCTGCCTATCCGTCCGGGAGAGAAAGATTGTCCCTATTACATGCAACATTACTCTTGTGAATTTGGAGGGGACTGCAAGTATAATCATCCTGACCCTACAGTTGAAGGATGTGATCCTCCTTCTCCAGTAACAGTAAACAATACATCTTCTTTTGTGCCCATGATGCTTTCGCCTACTCAAGTTTCTCCCCAAGGTTCTGATTGGAATGCATATCAGGAACCTATCTACCCATCTGTGGTGAGTATGCACCCACCTACACATATCATGAACAACCCAGCAATCATTACAAACACTTCACCCCAGCAACAGCAGATGCAAGTTGGAGTTGATGAGTTTGCAGAAATACCTGAGGATTCCAAGTCTAAATCCAAACGTAAATCTCGCCGTCAGAAGAATAAGCTTGCAAGTTTACCTCCATGCAATCTAAATGACAAGGGCCTGCCTTTGGGACCTGCTGTTGGTTCATCATCAACATTGTTGCCTAACCAAACCAAAGGCTCCAGATCAATGAGATGTGAAGTCTGCAAAATTGACTGTAACAGCAAAGATGCTTATGAAAAGCACATATCTGGAAAGAAACATAAGAATAATATGCAGATAAATGCTAATCCCATGCTAGCGCATGGTGGCAATAATGTAGGCAGCGAGGTAAAGAAACCGAAGCTGTCAAATGGTGGTGCACCCGTTGATTCTGCTAAAGTTTGCACAGTTTGCAACATTGTGTGTAATAGCCAAGATGTGTATAACAAACATATAGCCGGGAAAAAGCATGCGGCTCAGGTTGCACTGATGTCTAACAACGGGATTGGTCCATACGTTGCTGCATTTAAGAGTCAAGGTATTGGTCCTTGGAAGAAAGAGCCAAAGAAGATCAAGGTTATGCAACCGGTATGGTGTGACACTTGCAAGGTTACTTGTAATAGCAGGGATATGTATGCTTCTCACTTAGTGGGGAAGAAACATCTCAAGAACTTGGAGAAACAGTCAAAACCAGAAGCCAGTGCAAATGCCAATGCCGGGAAACTGTTAATTGGGCCCCAGGAAAAGCCGAATGCTGATAAAGTGAAATCGGAGGGAAAACCCAACAACTATAAACCAAATTCAAAGAAGGCTAAGGACTTGGATATCGAGGCGAATAAGCTCAAGGTTGTAGAAGGTGGTACTCTTTGTAATGTAGTATGCAACAGTGAGACCGTTTTCAATGCTCACCTTGCTGGCCATAAACATGCTTCTATGGTGAAGAAGCAAACTTTGGAGTCTAGTGGGACAAGTGCTAGCTGA 1812 0.452 MGNLQTKWPGTAIQPPQSNSPPPSSSSSFPNCSGQPHLQPPLAPLSSQEGALCGELQGKLDLKGATTGEGVERGDEVDDDRDIEGWESNSWEHDCVRARVRVSVNDGIGADKRKKRGGGGGNKSQGQFPKVAKEQAREREEPAETSGQTECKYYPTSGGCTKREDSTLPAAELNFLDLPIRPGEKDCPYYMQHYSCEFGGDCKYNHPDPTVEGCDPPSPVTVNNTSSFVPMMLSPTQVSPQGSDWNAYQEPIYPSVVSMHPPTHIMNNPAIITNTSPQQQQMQVGVDEFAEIPEDSKSKSKRKSRRQKNKLASLPPCNLNDKGLPLGPAVGSSSTLLPNQTKGSRSMRCEVCKIDCNSKDAYEKHISGKKHKNNMQINANPMLAHGGNNVGSEVKKPKLSNGGAPVDSAKVCTVCNIVCNSQDVYNKHIAGKKHAAQVALMSNNGIGPYVAAFKSQGIGPWKKEPKKIKVMQPVWCDTCKVTCNSRDMYASHLVGKKHLKNLEKQSKPEASANANAGKLLIGPQEKPNADKVKSEGKPNNYKPNSKKAKDLDIEANKLKVVEGGTLCNVVCNSETVFNAHLAGHKHASMVKKQTLESSGTSAS 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30375g00002 603 SMART ZnF_U1_5 344 378 IPR003604 GO:0003676|GO:0008270
Stsc30375g00002 603 SMART ZnF_U1_5 566 593 IPR003604 GO:0003676|GO:0008270
Stsc30375g00002 603 SMART ZnF_U1_5 407 441 IPR003604 GO:0003676|GO:0008270
Stsc30375g00002 603 SMART ZnF_U1_5 471 505 IPR003604 GO:0003676|GO:0008270
Stsc30375g00002 603 SUPERFAMILY beta-beta-alpha zinc fingers 324 376 IPR036236 -
Stsc30375g00002 603 Pfam Zinc-finger of C2H2 type 475 498 - -
Stsc30375g00002 603 Pfam Zinc-finger of C2H2 type 349 371 - -
Stsc30375g00002 603 Pfam Zinc-finger of C2H2 type 566 586 - -
Stsc30375g00002 603 Pfam Zinc-finger of C2H2 type 411 434 - -
Stsc30375g00002 603 MobiDBLite consensus disorder prediction 149 163 - -
Stsc30375g00002 603 MobiDBLite consensus disorder prediction 107 163 - -
Stsc30375g00002 603 PANTHER OS06G0651300 PROTEIN-RELATED 49 438 - -
Stsc30375g00002 603 SUPERFAMILY beta-beta-alpha zinc fingers 469 505 IPR036236 -
Stsc30375g00002 603 Gene3D Classic Zinc Finger 333 377 - -
Stsc30375g00002 603 Gene3D Classic Zinc Finger 392 441 - -
Stsc30375g00002 603 SMART c2h2final6 565 584 IPR013087 -
Stsc30375g00002 603 SMART c2h2final6 347 371 IPR013087 -
Stsc30375g00002 603 SMART c2h2final6 410 434 IPR013087 -
Stsc30375g00002 603 SMART c2h2final6 474 498 IPR013087 -
Stsc30375g00002 603 SUPERFAMILY beta-beta-alpha zinc fingers 566 594 IPR036236 -
Stsc30375g00002 603 MobiDBLite consensus disorder prediction 505 548 - -
Stsc30375g00002 603 MobiDBLite consensus disorder prediction 132 146 - -
Stsc30375g00002 603 MobiDBLite consensus disorder prediction 1 90 - -
Stsc30375g00002 603 MobiDBLite consensus disorder prediction 528 548 - -
Stsc30375g00002 603 ProSiteProfiles Zinc finger C3H1-type profile. 181 209 IPR000571 GO:0046872
Stsc30375g00002 603 MobiDBLite consensus disorder prediction 290 325 - -
Stsc30375g00002 603 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 183 207 IPR000571 GO:0046872
Stsc30375g00002 603 SUPERFAMILY beta-beta-alpha zinc fingers 406 441 IPR036236 -
Stsc30375g00002 603 Gene3D Classic Zinc Finger 564 602 - -
Stsc30375g00002 603 Gene3D Classic Zinc Finger 462 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30375g00002 Stsc-Chr30375 41006 45477 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30375g00002 365 590 C2H2 Transcription Factor Family AT5G61190 28.947 6.75e-21 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc30375g00002 zf-CCCH 0.00029 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30375g00002 - - adu:107463587 461.07