Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30375g00001 ATGGCATCTGGCGAGGGGTTTCTGACGGATGGACAGAGGGAGATTCTGAAGATCGCTAGCCAGAACGCGGAGAATCTGTCTTCGTCGCCGAAATCGCCGTCGTCGCTGCTTTCGTCTGAGCATCATCATGTTAAGGCTCCTGCTGGCGGCGGAAAGGCTCAGACCGCTGGGATTGCTGTCAGACATGTTCGTCGCTCTCACTCCGGGAAGTTAGTCAGGGTGAAGAAAGATGGTGCTGGTGGCAAGGGCACTTGGGGGAAATTGCTTGACACTGAAGTTGAAACTCACATAGATCGGAATGATCCAAATTATGACAGTGGCGAGGAACCCTATCAGTTGGTTGGATCTACAGTTATGGATCCCCTGGATGATTTCAAGAAAGCCGTGGTTTCTATCATAGAGGAGTATTTCAGTACTGGGGATGTGGATGTGGCTGCTTCTGACCTCAGAGAACTTGGATCTAGTGAATACTATCCATATTTTATCAAGCGCCTAGTGTCAATGGCAATGGACAGACATGATAAGGAGAAAGAAATGGCGTCTGTTCTGCTCTCAGCATTGTATGCTGATGTAATCAGCCCTGCACAGATCAGGGATGGATTTTTTATGCTTATTGAATCGGCCGATGATCTTGCAGTGGACATACTGGATGCAGTTGATATCCTTGCTTTATTCCTGGCACGAGCTGTAGTTGATGACATTCTTCCTCCAGCTTTCCTCGCCAGGGCAAGGAAGGCTCTTCCAGAATCTTCCAAGGGTGCTCAGGCAGTCCTGACCGCTGAGAAGAGTTATCTCTCTGCTCCACACCATGCGGAACTCGTGGAGAGGCGATGGGGTGGTAGCACTCACATCACCGTTGAAGAAGTGAAGAAGAAGATTTCCGATTTATTAAGAGAATATGTGGAGAGTGGTGACACATTTGAAGCCTGTAGGTGCATACGTGAGTTGGGGGTTTCGTTCTTCCATCATGAGGTTGTGAAGAGGGCTCTGGTACTTGCCATGGAGAACCGTTCATCAGAACCATTGATGTCAAAGCTACTAAAAGAAGCGGCAGAAGAAGGACTTATTAGTTCCAGCCAAATGGTCAAAGGGTTTTCTCGATTGGCAGAAGGCCTGGATGATCTTGCTCTTGATATTCCATCAGCTAAAGCCTTGTTTCAGTCATTGGTTCCCAAGGCAATATCTGAAGGATGGCTTGATGTTTCATTTGTTAACCCTACTGGCGACAATGGAGAAATTCAAGTCGAAGACGAGAAGGTGCGGAAGTACAAAAAGGAAGCTGTAACCATAATTCACGAGTATTTTCTCTCTGATGACATTCCTGAACTCATTCGGAGTCTTGAAGATCTTGGTGCACCTGAGTATAACCCAATATTCCTGAAGAAGCTAATAACTCTTGCAATGGACAGAAAGAACAGAGAAAAGGAAATGGCATCTGTACTGCTATCTGCTTTACATATAGAGATCTTCACAACAGAGGATATAGTTAATGGTTTTGTCATGCTTCTTGAAAGTGCAGAAGACACGGCACTAGATATATTGGATGCTTCAAATGAACTTGCTCTGTTCTTGGCTCGGGCTGTGATTGATGATGTATTGGCACCTCTGAATTTGGAAGAAATTGGCAGTAGGTTACCACCAAAGTGCAGTGGGACTGAGACCGTGCGAATGGCTCGCACACTCATAGGGGCTCGTCATGCTGGTGAGAGGCTGCTGAGATGTTGGGGAGGTGGAACTGGTTGGGCTGTTGAGGATGCCAAGGACAAGATCATGAAGCTCTTGGAGGAGTACGAAAGTGGCGGAGTTGTCAGTGAAGCTTGCCAGTGTATCCGGGACCTTGGAATGCCCTTCTTCAACCATGAGGTCGTCAAGAAAGCTTTGGTCATGGCCATGGAGAAGAAGAATGACAGGATGCTTGATCTGTTGCTGGAGGGGTTCAGTGAGGGTTTGATCACCATCAATCAGATGACAAAAGGGTTCACCCGAATCAAGGATAGTCTTGATGATCTTGCTCTGGACATTCCAAATGCAAAGGACAAGTTTGGGTTTTATGTGCAGCATGCCCAGACCAAGGGTTGGCTTCTACCGTCCTTTGATTCCTGTGCCACCGAGGTCTAA 2118 0.4717 MASGEGFLTDGQREILKIASQNAENLSSSPKSPSSLLSSEHHHVKAPAGGGKAQTAGIAVRHVRRSHSGKLVRVKKDGAGGKGTWGKLLDTEVETHIDRNDPNYDSGEEPYQLVGSTVMDPLDDFKKAVVSIIEEYFSTGDVDVAASDLRELGSSEYYPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPAQIRDGFFMLIESADDLAVDILDAVDILALFLARAVVDDILPPAFLARARKALPESSKGAQAVLTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKISDLLREYVESGDTFEACRCIRELGVSFFHHEVVKRALVLAMENRSSEPLMSKLLKEAAEEGLISSSQMVKGFSRLAEGLDDLALDIPSAKALFQSLVPKAISEGWLDVSFVNPTGDNGEIQVEDEKVRKYKKEAVTIIHEYFLSDDIPELIRSLEDLGAPEYNPIFLKKLITLAMDRKNREKEMASVLLSALHIEIFTTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEIGSRLPPKCSGTETVRMARTLIGARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLLEGFSEGLITINQMTKGFTRIKDSLDDLALDIPNAKDKFGFYVQHAQTKGWLLPSFDSCATEV 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30375g00001 705 SUPERFAMILY ARM repeat 582 698 IPR016024 -
Stsc30375g00001 705 ProSiteProfiles MI domain profile. 288 409 IPR003891 -
Stsc30375g00001 705 Gene3D - 117 267 - -
Stsc30375g00001 705 Gene3D - 412 565 - -
Stsc30375g00001 705 SUPERFAMILY ARM repeat 285 406 IPR016024 -
Stsc30375g00001 705 ProSiteProfiles MI domain profile. 585 704 IPR003891 -
Stsc30375g00001 705 Gene3D - 573 703 - -
Stsc30375g00001 705 Gene3D - 275 407 - -
Stsc30375g00001 705 ProSiteProfiles MI domain profile. 124 245 IPR003891 -
Stsc30375g00001 705 MobiDBLite consensus disorder prediction 20 57 - -
Stsc30375g00001 705 FunFam Programmed cell death protein 4 274 409 - -
Stsc30375g00001 705 PANTHER PROGRAMMED CELL DEATH 4 3 699 IPR039778 GO:0045892
Stsc30375g00001 705 Pfam MA3 domain 289 400 IPR003891 -
Stsc30375g00001 705 Pfam MA3 domain 587 694 IPR003891 -
Stsc30375g00001 705 Pfam MA3 domain 125 236 IPR003891 -
Stsc30375g00001 705 Pfam MA3 domain 424 533 IPR003891 -
Stsc30375g00001 705 ProSiteProfiles MI domain profile. 422 543 IPR003891 -
Stsc30375g00001 705 MobiDBLite consensus disorder prediction 20 39 - -
Stsc30375g00001 705 FunFam programmed cell death protein 4 412 566 - -
Stsc30375g00001 705 FunFam programmed cell death protein 4 116 268 - -
Stsc30375g00001 705 SMART ma3_7 125 236 IPR003891 -
Stsc30375g00001 705 SMART ma3_7 423 534 IPR003891 -
Stsc30375g00001 705 SMART ma3_7 289 400 IPR003891 -
Stsc30375g00001 705 SMART ma3_7 586 695 IPR003891 -
Stsc30375g00001 705 SUPERFAMILY ARM repeat 123 282 IPR016024 -
Stsc30375g00001 705 SUPERFAMILY ARM repeat 420 578 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30375g00001 Stsc-Chr30375 34935 39232 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30375g00001 589 685 Eukaryotic Initiation Factors Gene Family AT5G57870 33.000 2.19e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30375g00001 - - gmx:100809081 1220.3