Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30374g00009 ATGGGTGTGGTGGAGTCTATTGGGGAGTTTGGTTCACAGAACGTGAATGCAGGGGAAGAGGTGAAGGATGACGACGCTGAACCAATGGGTGGTGGTGCCAGAGAAAGAGAGTCAGGCGATAGCGGGGTTATGGAAGGAATGATGCCAGAGGAAATTTTGAAAAGGGTATTCACGAAAGATGAAGAAGCATATGAGGCCTACAAGGAGTTTGGGAAGTACCATGGATTTGGTGTAAGAAAGGGCGACTGCAAGAGGGACGAATTTGGCAATGTTACTAGTCGGAGATTCTTTTGCAACCGAGAAGGTTTAAGAGAGGCAAAGTACTACAATCGAGTGGATAGGGTTAGGGCGCACAAAGCTGAAACAAGGACAAATTGTCAGGCTAAGTTCTCAATATTTCTAGACAAGACTGAATCAGTTTGGCGCATGAGGAAAATTGACAACAACCACAACCATGAGCTTACTCCACACGGAATGGTGCACCTAATTCCAAAATATCGGTCAATGACAGTTGCTGCAAAGGATCAAATAAATGGTCTAAACCAGTGTGGGATCTCTACCGCGAAGGCAGTTCGATACATGGCTGGGATGGCCGGTGGGTATCCATTGGTTGGGTTTCTAAAGAAGGATGCATACAATTATGTTGACAAGAAAAGGCGTGAAAGCATAGCCGATGGAGATGCGGAGGCAGCAATTGCGTACTTGGAGGGAAAGACGGAAGCAGATCCAATGGCGATGGCAGTGTACAACATGACAGAGGATGGGATGCTGGGAAATTTATTCTGGGCTGATGGCCGCAGCAGATTGGATTACCAATACTTTGGCGACGTCCTTGCGTTCGATTCAACTTACAAGAAGAACAAGTATAATAGGCCGTTGGTTATTTTCTCAGGAGCGAACAATCACAAACAGACTACAATATTTGGTTTTGGAGTGGTGATGGATGAGACTATTGCGTCATACACGTGGTTGTTGGAGAAACTGCTTGAGGTAATGTGTGGCAGGCAGCCTTCTGTGGTTGTAACAGATGGTGACGAGTCGATGCGCAAAGCTATATGTGAAGTTTTTCCATCAGCTACCCATAGGCTATGTGCTTGGCACTTTGAGAAGAACGTAACCTCGAACGTGAAAGAAGTAGCGCTGAGGGAGCGATTTAATAGATGCTTATTTTGGGACATGACAGTTGATGAGTTTCTTATGGAATGGAGCAACACGGTTGAGGAGTTTGGTTTGGAGGAAAGTTTGTGGGCAAATCAAGTATTTTACAAGAAGGAGATGTGGGTGAATGCTTATCTACGCGAGAAGTTTTGTGCATGTATTAGGACGACGTCACGGTGCGAGGGTGTAAATGCAATAGCAAAGAACTTTCTCCAATCAAAGGGAACATTACTTGAGCTTGTGCAGAACCTTGAGTTGATGGTGAAAGATTATAGTAACAACGAGTTGTTGGCCCAATTTAGAACCATAGATGGTATACCGGTGATGACTACTAGCTTGGAATCGTTAGAACGTGATGCTGCAGAAACCTACACAAAGGCAGTCTTTGGCGATGTTCGGCTAGAGATAGAGAGGGTTGCTGTAGTAAACTTGGTGAGATTAGGTAGGTCCTTGACAACAAAGATTTACACACTCGAAGACTATGGATTTAGCGGGAGAAATGTCATTGTTCTTTTTGACATAAACATGGGGATGATGAAGTGTTCGTGCGGTCGTTGGTGCAAAAATGGCTACCCTTGTCGACATATGTTTTTTGTCATGAAGTCAGAACATCTCAAACAAATTCCTCGGCATCTAATTCTCAAGCGATGGACCAGAGATGCAAAGTCATTGGATGAATACGTAGAGAAAACAAAAGACAATGGTGATAGGTCATTTCTGTTGTGTCATGGCGCCCTGCACACCGCCTCTCAATGGCTATTTTTCTTGGGGGCACAAAAGTTTCACTTGTACGAGAAGGCAATGAAGACAATCCGTGAGTTGTGTGCTGAACTTGAGAGAGAATGTGCACATGGCCAAGGAGGAACTCCTCTAAATCCAAGAGGAGTGGTTCGTGATCCGAATGTAGCTAAGACTAAAGGGGCTCCTAAGTATTCTAAACGAATCCATAATAAGAGGCTTTGTACCGAATGCAAGAATACCGGCCATAACAAGAGGAAGTGCCCGGATGTCAAAAGGATTCCGAAGAAGAAGGTGCTGTATGATGGAGCTTTCGAATATGATGAGGTTATTATTACCTTCAATTTTGAGGCACTAGAGTTGAGTAAGGAAGATGTTACAATGATTGAGAAAGGACTACTTCATGTGGACTTGGGATTGAATAACTTCAATGATAATGAGTTTTCAGATTTTTTATTATCCAAGATGTCACTTCCGAAACTAGAGGAGTTTCAGCGGGTAGATTGTGCCTTTGAAGATATATTCCGTCCAAAAGAGCCTGGCATTGATTATTCCAAACTCCTCATGCATATTAGATGTTTGGAGATTACCAATCTATACATATAG 2502 0.4365 MGVVESIGEFGSQNVNAGEEVKDDDAEPMGGGARERESGDSGVMEGMMPEEILKRVFTKDEEAYEAYKEFGKYHGFGVRKGDCKRDEFGNVTSRRFFCNREGLREAKYYNRVDRVRAHKAETRTNCQAKFSIFLDKTESVWRMRKIDNNHNHELTPHGMVHLIPKYRSMTVAAKDQINGLNQCGISTAKAVRYMAGMAGGYPLVGFLKKDAYNYVDKKRRESIADGDAEAAIAYLEGKTEADPMAMAVYNMTEDGMLGNLFWADGRSRLDYQYFGDVLAFDSTYKKNKYNRPLVIFSGANNHKQTTIFGFGVVMDETIASYTWLLEKLLEVMCGRQPSVVVTDGDESMRKAICEVFPSATHRLCAWHFEKNVTSNVKEVALRERFNRCLFWDMTVDEFLMEWSNTVEEFGLEESLWANQVFYKKEMWVNAYLREKFCACIRTTSRCEGVNAIAKNFLQSKGTLLELVQNLELMVKDYSNNELLAQFRTIDGIPVMTTSLESLERDAAETYTKAVFGDVRLEIERVAVVNLVRLGRSLTTKIYTLEDYGFSGRNVIVLFDINMGMMKCSCGRWCKNGYPCRHMFFVMKSEHLKQIPRHLILKRWTRDAKSLDEYVEKTKDNGDRSFLLCHGALHTASQWLFFLGAQKFHLYEKAMKTIRELCAELERECAHGQGGTPLNPRGVVRDPNVAKTKGAPKYSKRIHNKRLCTECKNTGHNKRKCPDVKRIPKKKVLYDGAFEYDEVIITFNFEALELSKEDVTMIEKGLLHVDLGLNNFNDNEFSDFLLSKMSLPKLEEFQRVDCAFEDIFRPKEPGIDYSKLLMHIRCLEITNLYI 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30374g00009 833 MobiDBLite consensus disorder prediction 675 694 - -
Stsc30374g00009 833 Pfam SWIM zinc finger 566 582 IPR007527 GO:0008270
Stsc30374g00009 833 SMART 26again6 565 592 IPR006564 GO:0008270
Stsc30374g00009 833 PANTHER OS01G0519700 PROTEIN 48 703 - -
Stsc30374g00009 833 Pfam FAR1 DNA-binding domain 67 155 IPR004330 -
Stsc30374g00009 833 SUPERFAMILY Retrovirus zinc finger-like domains 699 729 IPR036875 GO:0003676|GO:0008270
Stsc30374g00009 833 MobiDBLite consensus disorder prediction 1 43 - -
Stsc30374g00009 833 MobiDBLite consensus disorder prediction 18 41 - -
Stsc30374g00009 833 Coils Coil 647 667 - -
Stsc30374g00009 833 ProSiteProfiles Zinc finger SWIM-type profile. 558 590 IPR007527 GO:0008270
Stsc30374g00009 833 Pfam MULE transposase domain 277 371 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30374g00009 Stsc-Chr30374 52748 56099 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Stsc30374g00009 MULE 2.6e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30374g00009 - - adu:107493380 865.144