Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30373g00003 ATGCCAGTGAGGCAGATGAAAGAAAGCTCTGAGCAACACATTGTGATCAAACCCCATCCTCAGAACCACATGAATAAGGCACCAAAAGCTGCACAGAATGGCAAAGGACCACCATCACCACCACCACCACAAGAGAACCACCAGTCATCACCTCAACCAAGAAACAAAGGGAGAAGAAGGGGCAGAGGTGGCAGAAAATCTGATCAAGGAGAGGCTTTGATGAGACCAAGTTGCAGGCCCTGCACTGCTGCTGCTCCTCCTCCTGTGACAGCAAACGGGAATAACATTAATAATGTTGAGAATGGCTGCAAGATCGGTGGTGTTGGTGGTAGTGACATAAAAGACATGGGATTTCCCACTTCAAGCAAATCCTTGAGCTTTGCTCGCAGGCCTGGCTATGGACAAGTTGGGACAAAATGCATTGTCAAGGCTAATCACTTCTTTGCTGAGCTACCGGACAAGGACTTAAACCAGTATGATGTTACAATTAGCCCGGAAGTGAGTTCAAGAGCAATAAATCGGTCCATAATAGCAGAACTTGTGAGGCTTTACAAAGAATCTGATTTGGGGATGAGGCTTCCTGCTTATGATGGCAGGAAAAGTCTGTACACTGCAGGCCAGCTTCCTTTTGCCTGGAGAGAATTTAAGATAAAGCTTCTTGATGATAATGATGATGGAGTTAATGGCCCCAAAAGGGAGAGGGAATATAGGGTGGTGATCAAGTTTGTTGCTCGTGCAAACTTGCATCACTTGGGCCAGTTTCTGGCCGGTAAGCGCGCTGATGCACCACAGGAGGCACTTCAGATTCTTGACATTGTTCTCAGAGAGCTATCAACTAAGAGGTACTGCCCCATTGGGAGGTCCTTCTTTTCACCTGATATTCGAACACCTCAACGGCTTGGAGAGGGATTGGAATCATGGTGTGGATTCTACCAGAGCATAAGGCCTACTCAGATGGGCCTTTCCCTCAATATTGACATGGCTTCTGCTGCATTCATTGAGCCTCTTCCAGTAGTAGAATTTGTTGGCCAACTATTAGGAAAAGATGTTCTTTCAAGGCCACTTTCGGATGCTGATCGCATCAAGATTAAGAAAGCCCTTAGAGGAGTTAAGGTTGAAGTAACACACAGAGGAAGTGTAAGAAGGAAATACCGCGTTTCAGGATTGACTTCTCAACCAACAAGAGAACTTGTGTTCCCTGTTGATGAGAACTCAACTATGAAGTCAGTGGTTGAATACTTTCAAGAGATGTATGGTTTCACTATTCAATACACTCACCTTCCTTGCCTTCAAGTTGGAAACCAGAAGAAGGCAAACTACTTACCAATGGAGGCCTGCAAAATTGTTGAGGGGCAAAGGTATACAAAAAGATTGAACGAGAAGCAAATTACTGCACTCCTCAAAGTTACTTGCCAGAGACCACGTGATCGCGAAAATGACATCTTACGGACGGTGCAACATAATGCTTACAATGAAGATCCTTATGCAAAGGAATTTGGTCTTAAAATCAGTGAAAAGCTAGCTTCTGTTGAAGCAAGAATTCTTCCTGCCCCTTGGCTTAAATACCATGAAAGTGGGAAAGAAAAGAACTGTTTGCCCCAAGTTGGTCAGTGGAATATGATGAACAAGAAAATGATTAATGGAATGACTGTTAGCCGGTGGGCATGCATTAACTTTTCGCGGAGCGTGCAAGATAGTGTTGCTCGGACGTTTTGTCATGAGCTTGCTCAAATGTGTCAAGTGTCTGGCATGGAATTCAATCCAGAGCCAGTCATCCCCATCTACAATGCCAAGCCAGAGCAGGTTGAGAAAGCTTTAAAGCATGTTTATCATGTGTCGACGAACAAAACTAAAGGAAAAGAGTTGGAGCTCTTGTTAGCAATATTGCCTGACAACAATGGATCTCTATATGGTGATCTCAAGCGTATTTGCGAAACTGACCTTGGTTTAATTTCACAATGCTGTCTGACAAAGCATGTCTTCAAGATCACCAAACAGTACTTGGCAAATGTATCTCTAAAGATCAATGTTAAGATGGGAGGTAGAAACACTGTTCTTCTAGATGCTGTAAGCTGCAGAATACCCTTGGTTAGCGACATACCAACCATAATATTTGGAGCAGATGTTACTCACCCTGAAAATGGAGAAGACTCTAGCCCTTCAATAGCAGCTGGCACAAGTAGGCCAGCACATTATCATGTTCTGTGGGATGAAAACAACTTCACAGCAGATGGAATTCAATCTTTGACAAACAATCTGTGTTACACATATGCAAGGTGTACACGCTCAGTATCAGTTGTTCCTCCAGCATATTATGCACACTTAGCAGCATTTAGAGCCCGTTTCTATATGGAGCCAGATATGCAAGAGAATGACTCTACAGGTGGCGGCAACGGTGGTGGTCGGAAGGGAACTCGAGCAGGCGGAGAGTGTGGTGTGAAGCCACTGCCAGCCTTGAAAGAGAATGTGAAGAGAGTAATGTTTTACTGCTGA 2493 0.4436 MPVRQMKESSEQHIVIKPHPQNHMNKAPKAAQNGKGPPSPPPPQENHQSSPQPRNKGRRRGRGGRKSDQGEALMRPSCRPCTAAAPPPVTANGNNINNVENGCKIGGVGGSDIKDMGFPTSSKSLSFARRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTISPEVSSRAINRSIIAELVRLYKESDLGMRLPAYDGRKSLYTAGQLPFAWREFKIKLLDDNDDGVNGPKREREYRVVIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRPLSDADRIKIKKALRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIQYTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILRTVQHNAYNEDPYAKEFGLKISEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQDSVARTFCHELAQMCQVSGMEFNPEPVIPIYNAKPEQVEKALKHVYHVSTNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLLDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENDSTGGGNGGGRKGTRAGGECGVKPLPALKENVKRVMFYC 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30373g00003 830 ProSiteProfiles PAZ domain profile. 336 450 IPR003100 GO:0005515
Stsc30373g00003 830 MobiDBLite consensus disorder prediction 789 808 - -
Stsc30373g00003 830 Gene3D paz domain 329 454 - -
Stsc30373g00003 830 ProSiteProfiles Piwi domain profile. 624 724 IPR003165 GO:0003676
Stsc30373g00003 830 Pfam Mid domain of argonaute 533 610 IPR032473 -
Stsc30373g00003 830 Gene3D - 514 687 - -
Stsc30373g00003 830 SUPERFAMILY Ribonuclease H-like 722 786 IPR012337 -
Stsc30373g00003 830 SUPERFAMILY PAZ domain 330 491 IPR036085 GO:0005515
Stsc30373g00003 830 Pfam Argonaute linker 2 domain 476 522 IPR032472 -
Stsc30373g00003 830 Pfam PAZ domain 362 466 IPR003100 GO:0005515
Stsc30373g00003 830 Gene3D - 725 830 IPR036397 GO:0003676
Stsc30373g00003 830 Gene3D - 693 724 IPR036397 GO:0003676
Stsc30373g00003 830 Pfam N-terminal domain of argonaute 139 274 IPR032474 -
Stsc30373g00003 830 SUPERFAMILY Ribonuclease H-like 510 720 IPR012337 -
Stsc30373g00003 830 FunFam Argonaute 10 514 687 - -
Stsc30373g00003 830 MobiDBLite consensus disorder prediction 1 81 - -
Stsc30373g00003 830 Pfam Piwi domain 625 724 IPR003165 GO:0003676
Stsc30373g00003 830 ProSiteProfiles Piwi domain profile. 725 785 IPR003165 GO:0003676
Stsc30373g00003 830 SMART Piwi_a_2 624 785 IPR003165 GO:0003676
Stsc30373g00003 830 CDD PAZ_argonaute_like 335 449 - -
Stsc30373g00003 830 MobiDBLite consensus disorder prediction 34 48 - -
Stsc30373g00003 830 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 117 724 - -
Stsc30373g00003 830 SMART DUF1785_2 283 335 IPR014811 -
Stsc30373g00003 830 Pfam Argonaute linker 1 domain 284 333 IPR014811 -
Stsc30373g00003 830 SMART PAZ_2_a_3 340 472 IPR003100 GO:0005515
Stsc30373g00003 830 FunFam Protein argonaute-2 329 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30373g00003 Stsc-Chr30373 22201 27704 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30373g00003 700 830 Eukaryotic Initiation Factors Gene Family AT5G43810 68.657 1.07e-48 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30373g00003 K11593 - gmx:100816999 1275.77