Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30372g00005 ATGTCGAGCTGCAGCATGGATGTTGTACCTGAGCAACTGTGCTACATCCCCTGCAACTTTTGCAACATTGTTCTTGCGGTGAGCGTTCCATGCAGCAGCTTGTTTGAGATGGTAACGGTTCGATGCGGCCACTGCACGAATCTATGGTCCGTTAACATGGCTGCCGCCTTTCAATCACTCTCATGGCAAGATCTTCATCATCAGGGAGCTGGGCAATGCAATCAGGATTATAGGATTGAGAATAATATGATGAATATGATTAATAATGGTGGCTCTTCTTCTTCGAAATGCAACAACAACAACATTGGTAGCAAGCTTGCATCAATGCGTGCACCTACCAATCATGTTACTCAGGAAAGGGCTGTCAACCGCCCACCTGAAAAGAGGCAGCGTGTACCTTCTGCTTATAATCAGTTCATAAAGGAAGAGATCCAAAGGATTAAGGCTAATAATCCTGATATCAGTCACAGAGAAGCGTTCAGTACAGCTGCAAAAAACTGGGCACATTTTCCTCATATTCATTTTGGGTTGATGTTGGAGAGCAACAATCAAGCTAATAAGATGGAGAATGCCACTGAGAAGCATTTGATGTCAAGGGCTGCACCTGCACTTATGAATAAATGA 624 0.4407 MSSCSMDVVPEQLCYIPCNFCNIVLAVSVPCSSLFEMVTVRCGHCTNLWSVNMAAAFQSLSWQDLHHQGAGQCNQDYRIENNMMNMINNGGSSSSKCNNNNIGSKLASMRAPTNHVTQERAVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNNQANKMENATEKHLMSRAAPALMNK 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30372g00005 207 CDD HMG-box_SF 131 167 - -
Stsc30372g00005 207 Pfam YABBY protein 10 177 IPR006780 GO:0007275
Stsc30372g00005 207 SUPERFAMILY HMG-box 122 170 IPR036910 -
Stsc30372g00005 207 Gene3D High mobility group box domain 114 198 IPR036910 -
Stsc30372g00005 207 FunFam axial regulator YABBY 5-like 115 173 - -
Stsc30372g00005 207 MobiDBLite consensus disorder prediction 110 130 - -
Stsc30372g00005 207 PANTHER PROTEIN YABBY 6-RELATED 1 189 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30372g00005 Stsc-Chr30372 35238 38092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30372g00005 11 185 C2C2-YABBY Transcription Factor Family AT2G26580 69.143 5.08e-80 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Stsc30372g00005 YABBY 3.7e-72 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30372g00005 K25796 - gmx:100804731 320.857